EY753298

Overview
NameEY753298
Unique NameEY753298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753298 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.032e-22
Identity = 69/209 (33.01%), Postives = 96/209 (45.93%), Query Frame = 3
Query:   12 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVXXXXXXXXXXXXXXQKASKNVLPPLQASMAYPSVNALAHGFAAWDDASMLVNAEKMMPS-QDEYTNLHAIEADDXXXXXXXXXXXXTVGGIGSSARTEPSTDMPKQGKQVPVLHGIPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPFNFETV 635
            E+WTDEEH KFLEAL LFDRDWKKIE FVGSKTVIQIRSHAQKYF+KVQKN T   +              QK   + +          +    +  FA W      +    +MP+  +   N   ++                V    SS R       P        L   P+F ++Y+F+ ++F+ +     + L ++   + ET+
Sbjct:   42 ENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGERIPPPRPKRKSIQPYPQKQKHDGMGAFIPDSLSGNHFISSSSFATW------MTYRGLMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNPSSNNGGTTL--TPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETM 242          
BLAST of EY753298 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 29/54 (53.70%), Postives = 45/54 (83.33%), Query Frame = 3
Query:   12 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTI 173
            E WT++EH++FLEAL+L+ R W++IE+ +G+KT +QIRSHAQK+F K++K   +
Sbjct:   25 ERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEV 78          
BLAST of EY753298 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:   12 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 161
            E WT+EEH++F+EAL+L+ R W+KIE+ V +KT +QIRSHAQK+F KV+K
Sbjct:   25 ERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEK 74          
The following BLAST results are available for this feature:
BLAST of EY753298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MYBG_DICDI7.032e-2233.01Myb-like protein G OS=Dictyostelium discoideum GN=... [more]
LHY_ARATH4.568e-1353.70Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH7.793e-1362.00Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-B10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753298 ID=EY753298; Name=EY753298; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGAAAGCTGGACTGACGAAGAACACGACAAGTTCCTTGAA
GCTCTTCAGCTGTTTGACCGTGACTGGAAAAAAATTGAAGATTTTGTCGG
TTCAAAGACAGTCATTCAGATTCGGAGTCATGCTCAGAAATACTTTTTGA
AGGTTCAAAAGAATGGGACAATTGCACATGTTCCTCCTCCTCGTCCCAAG
CGGAAAGCTGCTCATCCTTACCCACAAAAGGCCTCGAAAAATGTTCTACC
GCCCCTTCAAGCATCCATGGCTTATCCATCAGTAAATGCCCTTGCACATG
GATTTGCTGCTTGGGATGATGCTTCCATGCTGGTAAATGCTGAGAAAATG
ATGCCATCGCAGGATGAATATACCAATCTTCACGCAATCGAAGCTGATGA
TATTGGATCAAAGGGGATATCGGGAATAGGTAATAGTACTGTTGGTGGCA
TTGGAAGCTCAGCTAGAACAGAACCTAGTACAGACATGCCAAAACAGGGG
AAACAAGTTCCCGTTCTTCATGGTATTCCAGACTTCGCTGAAGTGTATAG
CTTCATAGGGAGTGTTTTTGATCCAGACACCAAAGGCCATGTACAAAAGC
TCAAAGAAATGGATCCCTTTAATTTTGAAACAGTATTGTTATTGATGAGG
AACCTCANCCTCAATTTGTCCAGTCCTGATTTTGAGCCAATTGAGTCTGT
AGGAAGATACCATGGCCACATAACAAGGAAAGATTGCTGGATGATATTTC
ANCGGGATAAGGGGTTNCAAGGTTNNGTTCTTAGNCTCGCTCATTTCTAG
GGACCAGATGTATATCCCAGTCGTTTTTTTGGGGTAGTTATTCTTAAGCT
GCTGCTTTTTTAACATGTTAGGGATACATCATACTTGTT
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