EY753287

Overview
NameEY753287
Unique NameEY753287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13083 contig Csv1_Contig13083:1..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753287 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.587e-26
Identity = 74/154 (48.05%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  253 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIVXNDFPADKANEIMQLASNGSSLS 681
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIV NDF A+KA E++ LAS G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of EY753287 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.398e-22
Identity = 64/149 (42.95%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  256 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPAPQTAQMTIFYGGQVIVXNDFPADKANEIMQLASNGSSLS 681
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S    A   + +   +FP+Q+ F+  + +    D  +        KP  Q+A +TIFYGG+V+V +DF A+KA E++ LA+ GS+ S
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMDSS----AGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS 153          
BLAST of EY753287 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.418e-14
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  250 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQD--VSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIVXNDFPADKANEIMQLASNGSSLS 681
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   +     +  R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+V N+FP DKA EIM++A   + ++
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVA 140          
The following BLAST results are available for this feature:
BLAST of EY753287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH9.587e-2648.05Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH8.398e-2242.95Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH8.418e-1434.90Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-A10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753287 ID=EY753287; Name=EY753287; organism=Citrus sinensis; type=EST; length=836bp
CCACGCGTCCGGGCTTAAAAGCACCCCAAAATGTTATTATTCCTCGTGTC
CAATCAACAGATAAGCCTTTTTCTCCTTACAAATACAGATTGATCATCCA
ACAGAACAACTTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTA
GTTTTATTTTTAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAGTTG
GTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGC
CGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTG
AAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACAT
TGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTA
TGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGCTCGA
AACATGGCAGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAACA
AGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTT
TAAACAAGCCCGCTCCGCAAACTGCTCAAATGACTATATTTTATGGCGGA
CAAGTGATTGTGTNCAATGATTTTCCTGCTGATAAAGCAAATGAAATCAT
GCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCTTATCCTN
CTATGCAACTGCCGGCCCAGGGGTACAACTCTTTTGCTGCTAGTTTACCA
AAAAGTCCAGNTTGATCAACTCCCCCGGTTTCTCTCTACTTTGGCAACAA
TCTAATTCCAGACGCGCTCAACCTCCCTCGAGACCT
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