GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:1262..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.758e-28
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTV+MQS I+DVI PAGW+EW+GNFALDTLFY EY NTGAGA TS RVKW   KVITS+ EAQ YT   FIAG +  ++T
Sbjct:  494 YSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSST 575          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTV+MQS I+DVI+PAGW+EW GNFAL+TLFY E+QN GAGA TS RVKW  F+VITSA EAQ +T  +FIAGS+   +T
Sbjct:  495 YSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 576          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.966e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTV+MQS I+D+I+PAGW+EW GNFAL+TLFY E+QN+GAGA TS RVKW  F+VITSA EAQ +T  +FIAGS+   +T
Sbjct:  495 YSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 576          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.472e-27
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            YSRTVVMQS I++VINPAGW+ W GNFALDTL+Y EYQNTGAGA TS RV W  FKVITS+ EAQ +T  +FIAG +
Sbjct:  230 YSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGS 306          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.261e-26
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTV+MQSDISDVI P GW+EWSG+FALDTL Y EY N G GA T+NRVKW  +KVITS  EAQ +TA  FI G    A+T
Sbjct:  498 YSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLAST 579          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.840e-25
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YS+TV+MQS ISDVI P GW EW+G FAL+TL Y EY NTGAGA T+NRVKW  FKVIT+AAEAQ YTA  FI G    ++T
Sbjct:  503 YSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSST 584          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.452e-22
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            +YSRTV +++ +  +INPAGW EWSG+FAL+TL+YAEY NTG G+ T+NRVKW  + V+TS ++   +T  NFIAG++
Sbjct:  420 QYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNS 497          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            RP R YSRTV M++ +  +I+P GW EW GNFAL TLFYAE+QNTG GA TS RV W  F+V+ SA+EA  +T   F+AG +
Sbjct:  418 RPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGS 499          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.002e-21
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRTV+MQS I + I+PAGW+ W G FAL TL+Y EY NTG GADTS RV W  FKVI  + EA+ +T A  I G
Sbjct:  468 YSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKLIQG 542          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.328e-20
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTV MQ+ +SD INP GW EW+GNFALDTL+Y EY N+G GA    RVKW  + V+ ++AEA  +T +  I G+
Sbjct:  436 YSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGN 511          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PMEU1_SOLLC6.758e-2869.51Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_CITSI1.153e-2768.29Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.966e-2767.07Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME_DAUCA7.472e-2771.43Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME2_ARATH8.261e-2667.07Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH1.840e-2567.07Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_CITSI9.452e-2255.13Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH1.612e-2157.32Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME18_ARATH8.002e-2160.00Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME32_ARATH2.328e-2055.26Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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