GE213148

Overview
NameGE213148
Unique NameGE213148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:1..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.131e-43
Identity = 84/91 (92.31%), Postives = 91/91 (100.00%), Query Frame = -1
Query:   24 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 296
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SA+KFEPKY
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKY 91          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.806e-41
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = -1
Query:   24 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 296
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++A+KFEPKY
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKY 91          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.296e-30
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = -1
Query:   24 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 296
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ A+K+EPKY
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKY 91          
The following BLAST results are available for this feature:
BLAST of GE213148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH1.131e-4392.3140S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH1.806e-4186.8140S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_XENLA7.118e-3073.2640S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_RAT7.118e-3073.2640S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB7.118e-3073.2640S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE7.118e-3073.2640S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU7.118e-3073.2640S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN7.118e-3073.2640S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN7.118e-3073.2640S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_DICDI9.296e-3063.7440S ribosomal protein S24 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC11 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213148 ID=GE213148; Name=GE213148; organism=Citrus sinensis; type=EST; length=398bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTTGGGCTCAAACTTCCTAGCACT
GTCAACTGAATCATAGATCAGACCAAAGCCGGTAGATTTCCCACCTCCAA
AGTGAGTTCGAAACTTAAAAACAAAGATTGAGTTGGGGTCCTTCACATCA
TACATCCTCGCCAACTTCTCCTTCAACTCAGCCTTGGAAACATTGGCCCT
GCCAGGATGAAGAACATCAATAACGAATTGCTTCCTGGAAAGGAGACGGT
TGGTCATGAACTTCCTAGTTCGAATGGTGACAGCCTTGTCCGCCATTGTT
GGTTGGTTAAAAGTCTGCTGAATCCTCGACAAAGATATAGCACGAGAGGC
GCGACTAGGCAATGAAGCGAGTTAACACCTCGGCCGCGACCACGCTAA
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