GE213139

Overview
NameGE213139
Unique NameGE213139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:920..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.262e-55
Identity = 105/127 (82.68%), Postives = 109/127 (85.83%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV  GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEY
Sbjct:  270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEY 396
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.040e-55
Identity = 104/127 (81.89%), Postives = 108/127 (85.04%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV KGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL Y
Sbjct:  270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGY 396
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.267e-54
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV KGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+Y
Sbjct:  270 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQY 396
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.267e-54
Identity = 100/127 (78.74%), Postives = 108/127 (85.04%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV KGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EY
Sbjct:  257 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 383
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.241e-53
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GV KGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EY
Sbjct:  261 YNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEY 387
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.766e-53
Identity = 100/127 (78.74%), Postives = 107/127 (84.25%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+  GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EKLLEY
Sbjct:  267 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEY 393
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.161e-53
Identity = 99/127 (77.95%), Postives = 107/127 (84.25%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV KGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEY
Sbjct:  266 YNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEY 392
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.341e-52
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGV KGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEY
Sbjct:  260 YNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 386
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.216e-52
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV KGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEY
Sbjct:  269 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEY 395
[Close]
BLAST of GE213139 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.216e-52
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 2 
Query:   23 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVRKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEY 403
            YNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GV KGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+Y
Sbjct:  272 YNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQY 398
The following BLAST results are available for this feature:
BLAST of GE213139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_MALDO2.262e-5582.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.040e-5581.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR3.267e-5479.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.267e-5478.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.241e-5377.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.766e-5378.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE6.161e-5377.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.341e-5275.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN5.216e-5275.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.216e-5275.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC2 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213139 ID=GE213139; Name=GE213139; organism=Citrus sinensis; type=EST; length=425bp
ATTAGCGTGGTCGCGGCCGAGGTACAACAAGGAGGAGAACCCCCGTGTCC
CAATCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATC
CGTGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCG
TATTGGTGTGCGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACG
ACATTGTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATCGATTTCTTT
GGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTC
TGGTATTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAG
CAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAG
TACATGCCCGGGCGGCCGCTCGAAA
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