FE659078

Overview
NameFE659078
Unique NameFE659078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10451 contig Csv1_Contig10451:211..479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.587e-37
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = -1
Query:    3 SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 269
            SIN GHADLR   WWP L   DDLVSILTT+IWLASAQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPEY SF++ P KY+  ++PS
Sbjct:  732 SINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFISHPEKYYFSSMPS 820          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.966e-36
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = -1
Query:    3 SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 269
            SIN GHAD R   WWP L   +DLVS++TTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPE+TSF+  P KYF  ++PS
Sbjct:  739 SINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEFTSFIEDPQKYFFSSMPS 827          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.741e-32
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = -1
Query:    3 SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 269
            ++ +GHAD R   WWP L    DL S+LTT++WL SAQHAALNFGQYP GGY+PNRPPLMRRLVP E DPEY   +A PH++FL ALPS
Sbjct:  713 AVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPS 801          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.842e-31
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = -1
Query:    6 SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPD-END-PEYTSFLAGPHKYFLLALP 269
            SI+ GH DLRH  WWP L    DL SILTT++WLASAQHAALNFGQYP GGYVPNRPPL+RRL+PD E D  EY +FLA PH++FL A+P
Sbjct:  727 SIHVGHGDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMP 816          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.721e-26
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = -1
Query:    3 NTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 263
            N GH D + E WWP L    DL  ILT +IW+AS QHAA+NFGQYP+GGYVPNRP L+R+L+P E DP+Y  F+  P   FL +LP+
Sbjct:  731 NKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPT 817          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.604e-21
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:   18 GHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFL 257
            GH D ++E WWP +    +L+   TTIIW+ASA HAA+NFGQYPY GY+PNRP + RR +P+   PEY      P K FL
Sbjct:  679 GHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFL 758          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -1
Query:   18 INTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFL 266
            +  GH DL+ + WWP + + ++LV + TT+IW+ASA HAA+NFGQYPYGG + NRP + RR +P++   EY +    P K FL
Sbjct:  561 VQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYAALAKNPEKEFL 643          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.029e-21
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = -1
Query:    3 GHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 257
            GH DL+   WWP + +  +L    TTIIW+ASA HAA+NFGQYPY GY+PNRP + RR +P+    EYT     P K+F+  + S
Sbjct:  675 GHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEKFFIRTITS 759          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -1
Query:   54 GHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEY 257
            GH D RHESWWP++   DDL+   T IIW+ASA HAA+NFGQYPY G++PNRP + RR +P+    EY
Sbjct:  699 GHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEY 766          
BLAST of FE659078 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = -1
Query:    3 SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAGPHKYFLLALPS 269
            ++  GH DL+ + WWP L   ++LV I T IIW ASA HAA+NFGQYPYGG++ NRP   RRL+P++  PEY   +    K +L  + S
Sbjct:  680 AVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLRTITS 768          
The following BLAST results are available for this feature:
BLAST of FE659078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX3_ARATH3.587e-3776.40Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH3.966e-3674.16Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ7.741e-3266.29Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ3.842e-3170.00Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH3.721e-2657.47Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX1_SOLTU3.604e-2152.50Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXB_PHAVU6.148e-2148.19Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX1_ORYSJ8.029e-2149.41Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX5_ARATH1.370e-2058.82Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX2_SOYBN1.370e-2048.31Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC17 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659078 ID=FE659078; Name=FE659078; organism=Citrus sinensis; type=EST; length=269bp
ACGCTTGGCAATGCCAGCAGGAAATACTTGTGTGGGCCAGCTAAGAAACT
GGTATACTCGGGGTCATTTTCGTCGGGGACTAATCTTCTCATTAGGGGAG
GGCGATTGGGCACATAACCACCATACGGGTACTGTCCAAAATTGAGTGCA
GCGTGCTGTGCAGATGCGAGCCAGATGATCGTAGTTAGGATGGACACCAG
ATCATCACCGTTGATTAATGTGGGCCACCAGCTTTCGTGGCGAAGATCGG
CATGGCCTGTGTTGATGGA
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