EY720038

Overview
NameEY720038
Unique NameEY720038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11255 contig Csv1_Contig11255:5..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720038 vs. ExPASy Swiss-Prot
Match: UBP53_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.086e-22
Identity = 81/293 (27.65%), Postives = 125/293 (42.66%), Query Frame = 3
Query:   15 CALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAE-------SSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDI-SILYRGLDPKRRHS---LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKXVGS-WSDVLSMCERGTCNLRSFL 857
            CAL  IF         +R++A+   ++R AL+  + D   FQ   M+DA+E    + + +H    P  +                CT+ +CI H  F M ++E+  C SCG  S  L +T F   I+ +AL        E           ELL            P    C +   I  +L   P + T  L W +  E  D   A +  L+  + +  + YR  D   ++S   LV ++CY  QHY  FA+     +W+ +DD  VK +G+ W DV+S C R  C+ +  L
Sbjct:   76 CALKTIFAQFQ----HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVPSRDADM-------------CTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCNEVERMLERHERFKPEMFAELLQAANTTDDYRKCP--SNCGQKIKIRRVLMNCPEIVTIGLVWDS--EHSDLTEAVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVVSKCIR--CHFQPLL 345          
BLAST of EY720038 vs. ExPASy Swiss-Prot
Match: UBP54_MOUSE (Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 83/287 (28.92%), Postives = 125/287 (43.55%), Query Frame = 3
Query:   15 CALYEIFTALSIASTDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKXVG-SWSDVLSMCERG 833
            CAL  IF     +S     E V P+ +LR AL+  + D   FQ   M+DA+E    +   +H       +++D    +        CT   CI H  F M +FE+  C SCG  S  L +    H I+ +AL    +   E       S   ELL N   M     C    G  E++  I  +L   P + T  L W +      +D+  +L       D+   +R  D + + S   LV ++CYYG+HY  F +     +W+ +DD  VK +G  W DV++ C +G
Sbjct:   77 CALKGIFNQFQCSS-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIADETKEDI-------CTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALCNQAICMLEKREKPSPSMFGELLQNASTMGDLRNCPSNCG--ERIR-IRRVLMNAPQIITIGLVWDSEHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340          
BLAST of EY720038 vs. ExPASy Swiss-Prot
Match: UBP54_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 82/287 (28.57%), Postives = 125/287 (43.55%), Query Frame = 3
Query:   15 CALYEIFTALSIASTDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKXVG-SWSDVLSMCERG 833
            CAL  IF     +S     E V P+ +LR AL+  + D   FQ   M+DA+E    +   +H       +++D    +        CT   CI H  F M +FE+  C SCG  S  L +    H I+ ++L    +   E       S   ELL N   M     C    G  E++  I  +L   P + T  L W +      +D+  +L       D+   +R  D + + S   LV ++CYYG+HY  F +     +W+ +DD  VK +G  W DV++ C +G
Sbjct:   77 CALKGIFNQFQCSS-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIADETKEDI-------CTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLERREKPSPSMFGELLQNASTMGDLRNCPSNCG--ERIR-IRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340          
BLAST of EY720038 vs. ExPASy Swiss-Prot
Match: UBP53_MOUSE (Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 80/293 (27.30%), Postives = 124/293 (42.32%), Query Frame = 3
Query:   15 CALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASAL-----RTMK--VMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDI-SILYRGLDPKRRHS---LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKXVGS-WSDVLSMCERGTCNLRSFL 857
            CAL  IF         +R++A+   ++R AL+  + D   FQ   M+DA+E    I   +H    P  +                CT+ +C+ H  F M ++E+  C SCG  S  L +T     I+ +AL     R M+           ELL            P    C +   I  +L   P + T  L W +  E  D     + +L+  + +  + YR  D     S   LV ++CY  +HY  FA+     +W+ +DD  VK +G+ W DV+S C R  C+L+  L
Sbjct:   76 CALKTIFAQFQ----HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIHFHLVPNRDADM-------------CTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCNEVERMMERHERVKPEMFAELLQAANTADDYRKCP--SNCGQKIKIRRVLMNCPEIVTIGLVWDS--EHSDLTEDVVRSLATHLYLPGLFYRVTDENATDSELHLVGMICYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVVSKCIR--CHLQPLL 345          
BLAST of EY720038 vs. ExPASy Swiss-Prot
Match: UBP54_RAT (Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 81/287 (28.22%), Postives = 124/287 (43.21%), Query Frame = 3
Query:   15 CALYEIFTALSIASTDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESS-------LDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKXVG-SWSDVLSMCERG 833
            CAL  IF     +S     E V P+ +LR AL+  + D   FQ   M+DA+E    +   +H       +++D    +        CT   CI H  F M +FE+  C SCG  S  L +    H I+ ++L    +   E           ELL N   M     C    G  E++  I  +L   P + T  L W +      +D+  +L       D+   +R  D + + S   LV ++CYYG+HY  F +     +W+ +DD  VK +G  W DV++ C +G
Sbjct:   77 CALKGIFKQFQCSS-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIADETKEDI-------CTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCG--ERIR-IRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340          
The following BLAST results are available for this feature:
BLAST of EY720038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBP53_HUMAN3.086e-2227.65Inactive ubiquitin carboxyl-terminal hydrolase 53 ... [more]
UBP54_MOUSE1.693e-2028.92Inactive ubiquitin carboxyl-terminal hydrolase 54 ... [more]
UBP54_HUMAN3.772e-2028.57Inactive ubiquitin carboxyl-terminal hydrolase 54 ... [more]
UBP53_MOUSE1.098e-1927.30Inactive ubiquitin carboxyl-terminal hydrolase 53 ... [more]
UBP54_RAT1.872e-1928.22Inactive ubiquitin carboxyl-terminal hydrolase 54 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-B11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720038 ID=EY720038; Name=EY720038; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGGTCTGTGCATTGTATGAGATTTTTACTGCCCTGAGCATT
GCATCAACAGATACGCGGAAAGAGGCAGTTGCCCCTACATCTCTGAGGAT
AGCCCTAAGTAACTTATACCCAGATAGTAATTTCTTCCAGGAGGCACAGA
TGAATGATGCTTCTGAAGTACTGGCAGTAATATTTGACTGCCTTCATAGG
TCATTTACTCCTGGTTCTAATGTTTCCGATACTGAATCAGTAGAAAGCAA
TTGCATGGGATCTTGGGATTGTACAAACAGTGCTTGCATAGTCCATTCTC
TTTTTGGAATGGACATTTTTGAACGAATGAACTGCTACAGTTGTGGTTTA
GAATCCAGACATCTAAAGTACACTTCATTCTTTCATAACATAAATGCCAG
TGCCCTCCGAACAATGAAGGTTATGTGTGCAGAAAGCTCCTTAGATGAGC
TCTTAAATCTTGTAGAAATGAATCATCAATTAGCTTGTGATCCAGGGGCT
GGTGGCTGTGAGAAGCTCAACTACATCCATCATATTCTCTCAACTCCACC
ACATGTTTTCACAACAGTTCTGGGCTGGCAGAATACATGTGAGAGTTTCG
ATGACATAACAGCAACACTGGCAGCCTTAAGTCCTGAGATTGATATTAGC
ATTCTCTATCGTGGGCTGGATCCGAAGAGGAGACATAGCTTGGTTTCAGT
GGTTTGCTACTACGGGCAGCATTATCATTGCTTTGCCTACAGTCATGATC
AAGAACGGTGGATTATGTATGATGACAAAACTGTGAAGGNTGTTGGTAGC
TGGTCCGATGTCCTCAGCATGTGTGAAAGGGGCACTTGCAACCTCAGGTC
TTTTCTTCGAGCTGTAAATAGAATAT
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