EY692483

Overview
NameEY692483
Unique NameEY692483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692483_ssr168 microsatellite EY692483_ssr168:168..182. BLAST: Citrus ESTs to Prunus persica proteins V1
EY692483_ssr107 microsatellite EY692483_ssr107:107..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9225 contig Csv1_Contig9225:1..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY692483 vs. ExPASy Swiss-Prot
Match: Y2010_ARATH (LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.096e-37
Identity = 79/153 (51.63%), Postives = 98/153 (64.05%), Query Frame = 3 
Query:  183 MGDNEIKITVKFCGRPIPITLSPDSXXXXXXXXXXXXXXXXXXGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRK--TDRVRDMK-MVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDI 632
            M D+ IK+TVKF G+ IP+++SPD                   GQKLIFKGKVL    TL  + V +G KLML+ +QG+HQG+GPILKEA     SR   +D+V   K  V V K  ++RWKATGVIALA+ NLK IP+EVWDC   +RVLDI
Sbjct:    8 MADSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQGLHQGEGPILKEASIRPISRTVVSDKVDQRKPSVLVDKNRTDRWKATGVIALAQANLKEIPEEVWDCGSGVRVLDI 160

HSP 2 Score: 35.8094 bits (81), Expect = 4.096e-37
Identity = 19/44 (43.18%), Postives = 25/44 (56.82%), Query Frame = 1 
Query:  751 IEHLTVLSISRNCFDSXAGILGHLTGLQHLDVSNNK*LPSPTEL 882
            ++ L +LSIS N        +G LT L+ LDV+NNK    P EL
Sbjct:  201 LKRLMLLSISHNNLTVLPSAMGSLTSLRQLDVTNNKLTSLPNEL 244
The following BLAST results are available for this feature:
BLAST of EY692483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2010_ARATH4.096e-3751.63LRR repeats and ubiquitin-like domain-containing p... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-B06-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692483 ID=EY692483; Name=EY692483; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGGTTTTAAGAACTGACATTCAAATCCTATTCCGCCTCCAG
TAGCATTTTCTATTCTCAAAAAAGAAGAATACTTTTTGTTTCTTGAAAAA
AAAGAAAAAGAAAGAAAGAAAGAGGTCTCGCAACAAAACCAGTCATCATT
AGGAAGGAAAACAAAGCAAGAAGAAGAAGAAGATGGGTGATAATGAAATT
AAGATCACTGTGAAATTCTGTGGAAGACCAATACCAATAACGCTTTCGCC
TGATTCTACCGTTCTACGCCTGAAGAATCTTCTCTTGCCTCTCACAAATG
TCCTTCCTCGTGGCCAAAAACTCATCTTCAAAGGGAAGGTTTTGGCGAAT
GAAGAGACTTTGGGAGTAGCTGGGGTTACAAATGGAGTTAAGCTCATGCT
AATTGGCACTCAGGGTGTGCATCAAGGGGATGGCCCTATATTGAAAGAAG
CTCAGAGCCCTATTACTTCAAGGAAGACTGATAGAGTGAGAGACATGAAG
ATGGTTCCGGTTGGCAAGACCTCTTCAGAAAGGTGGAAGGCTACTGGAGT
AATAGCGTTGGCCGAACACAACTTGAAGGCTATTCCAGATGAAGTATGGG
ATTGCTCACCTTTTATAAGAGTCCTTGATATCAGAACAACTCCATTCAGT
GTGTTCCAGACCAAATTGATGGTTTGACTGGCTTGAAGAAACTGCTCCTT
GACGCAAATGATTTATCCAATGATTCCATTAGCTGGGTACAACTTGCAAA
ATTGAGCATCTAACGGTTCTATCTATTAGCCGAAACTGCTTTGACTCTTT
NGCTGGCATATTGGGTCATCTGACTGGCCTGCAGCATCTAGATGTCTCAA
ACAACAAGTAACTACCCTCCCCCACTGAATTGACTTTTGAGTAAACTTGA
GGTTTGAAGCCACACAATATTCTT
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