EY692474

Overview
NameEY692474
Unique NameEY692474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.301e-59
Identity = 105/179 (58.66%), Postives = 140/179 (78.21%), Query Frame = 1
Query:  139 FEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDYKE 669
            +EQ ++ +P SF+  EK  +ESG KI++PPSAL+ L+ L+I YPMLFE+ N  + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+DISNPKA+LE +LR ++ LT  D IM+ YNN KYY+ ++E KP+NAISIIE D  VDFAPP+D KE
Sbjct:   25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKE 203          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.254e-58
Identity = 111/220 (50.45%), Postives = 144/220 (65.45%), Query Frame = 1
Query:  139 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDYKEPEXXXXXXXXXXXXXXXXXXXRPTQISPFTGVARRLDGK 786
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE                          F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERPVQHEESIEGEADHSGYAGEVGFRAFSGSGNRLDGK 238          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.638e-58
Identity = 111/220 (50.45%), Postives = 144/220 (65.45%), Query Frame = 1
Query:  139 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDYKEPEXXXXXXXXXXXXXXXXXXXRPTQISPFTGVARRLDGK 786
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE                          F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGK 238          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.225e-58
Identity = 109/220 (49.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query:  139 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDYKEPEXXXXXXXXXXXXXXXXXXXRPTQISPFTGVARRLDGK 786
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++C+TTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEP+                          F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPKRPVQHEESIEGEADHSGYAGEVGFRAFSGSGNRLDGK 238          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.610e-56
Identity = 104/200 (52.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query:   79 FEYSFTVKMFFDGYGYHGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDYKE 669
            F +S    MF +G  +H      +Y+C+  S +   E+  +E G KIIMPPSALD L  L+++YPMLF+L N    R SH GVLEF+A+EG  Y+P+WMMENLLL EGDI+ +++V+LP  T+ K QPH+ DFLDI+NPKA+LE  LRN++CLT GD I + YN K Y + ++ETKP NA+SIIE D  V+F  P+ YK+
Sbjct:    2 FHFSGFNMMFPEGRNFHA-----NYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 197.978 bits (502), Expect = 6.240e-50
Identity = 91/183 (49.73%), Postives = 132/183 (72.13%), Query Frame = 1
Query:  139 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCXVDFAPPLDYKE 669
            F+  YRCYP + I   E+P +  G K+I+PPSAL++L+ L++ YPMLF+  N AAE+ +H GVLEFIAEEG +Y+PYWMM  L L+ GD+VRV N  + +G+YVKLQP + +FLDI++ +A+LE  LRN+S LT  D   + YN++ Y I +I+ +P ++   +S++ETD  VDF PP+ Y+E
Sbjct:   32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEE 214          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.007e-48
Identity = 95/187 (50.80%), Postives = 128/187 (68.45%), Query Frame = 1
Query:  136 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIETDCXVDFAPPLDYKEPE 675
            +FE+ +RCYP +     I K     G KI +PPSAL +L+ L+I YPMLF+L  N   RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ +  +P G +VKL+P + DFLDIS+PKA+LE  LRN+S LT  D I ++YN K + I I+E KP   S +I +IETD   DFAPP+ Y EP+
Sbjct:   20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPD 206          
BLAST of EY692474 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.482e-40
Identity = 90/236 (38.14%), Postives = 128/236 (54.24%), Query Frame = 1
Query:  136 SFEQSYRCYPASFIEKP------QIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCXVDFAPPLDY-------------KEPEXXXXXXXXXXXXXXXXXXXRPTQISPFTGVARRLDGK 786
            +++Q++  Y   F+         +I  G KI++P SAL+ L   +I  PMLF+L N A +RV+HCGVLEF A EG   +P WMM+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+NPKA+LE  LR Y+CLT  D I  +Y  +     +++ KP+N++ IIE D  +DF PP  Y             K P                         S F G  RRLDGK
Sbjct:   20 NYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGK 255          
The following BLAST results are available for this feature:
BLAST of EY692474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UFD1_DICDI3.301e-5958.66Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT1.254e-5850.45Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN1.638e-5850.45Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE6.225e-5849.55Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME7.610e-5652.00Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_SCHPO6.240e-5049.73Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
UFD1_YEAST2.007e-4850.80Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL4.482e-4038.14Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692474 ID=EY692474; Name=EY692474; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGCTAAACCATCATCACAGTTTCTCTCCGTCTCTCTTCGGT
GCGGGAGCTGAAAGGTTGACTATCTTGGTTTGAATACTCATTCACAGTAA
AAATGTTTTTTGATGGATATGGATATCATGGGACATCATTTGAGCAGAGT
TACCGATGTTACCCTGCATCATTTATTGAAAAGCCACAAATAGAAAGTGG
TGACAAAATTATAATGCCTCCTTCAGCCCTTGATCGCCTTGCATCTTTGC
ATATTGATTATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTGAGCGG
GTTTCCCACTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATGATCTA
TATGCCATACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGATATTG
TGCGAGTGAAAAATGTGACACTTCCAAAGGGAACATATGTCAAACTTCAA
CCTCACACAAAGGACTTTCTCGATATTTCTAATCCCAAAGCCATCTTGGA
GACGACGTTAAGGAATTATTCCTGCTTGACCACTGGGGACAGTATTATGG
TGGCATATAACAATAAGAAATATTACATTGACATTATAGAGACGAAGCCT
TCTAATGCAATAAGCATCATTGAGACTGACTGTGANGTAGATTTTGCACC
TCCTCTGGATTATAAGGAACCTGAAAAACAATTGCATCTGCTTTCAGTAN
GGCAACAGCAAAAGCTGAAGAGGCTTCTGNTGAGACCGACCCAAATCAGC
CCTTTTACTGGAGTAGCTAGACGGTTGGATGGGAAACCTTTGAATATCAA
CCTCCTCTGTTCTTNCNTAGGNTNNCAAGACAGCACTGCCACGNCTATGT
ACTGGGCAGCATCTGCAGGTCTACTTCCAAATGCTGCAGAAGTCCAGG
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