EY710870

Overview
NameEY710870
Unique NameEY710870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6783 contig Csv1_Contig6783:387..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    9 PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            PGV IAIMGCIVNGPGEMADADFGYVG  PGKIDLYVGK  V++ I    A D L+ LI+ HGRW EP
Sbjct:  582 PGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKECVEKDIDFADADDRLVNLIRAHGRWIEP 649          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            GV IA+MGCIVNGPGEMADADFGYVGGAP KI+LYV  T VK  I  E+A + L+ LIK++GRW +P
Sbjct:  518 GVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDP 584          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.868e-20
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  + ME A + LIQL+K+HG W EP
Sbjct:  534 GLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSYVPMENAEEELIQLLKEHGVWKEP 600          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+G W +P
Sbjct:  594 GVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNGLWQDP 660          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  535 GLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  535 GLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  535 GLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  535 GLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.803e-19
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    9 PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            PG+ IAIMGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + LI+L+++HG W +P
Sbjct:  539 PGLKIAIMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELIRLLQEHGVWKDP 606          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.803e-19
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFG+VG   G +DLYV  T VK  I MEQA D L+ L+K+HG W +P
Sbjct:  539 GLKIAVMGCIVNGPGEMADADFGFVGSKTGMVDLYVKHTCVKAHIPMEQAEDELVLLLKEHGVWKDP 605          
The following BLAST results are available for this feature:
BLAST of EY710870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_PARUW1.650e-2272.064-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM84.064e-2168.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU5.868e-2067.164-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN7.664e-2064.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.707e-1965.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.707e-1965.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.707e-1965.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.707e-1965.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN3.803e-1964.714-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB3.803e-1964.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710870 ID=EY710870; Name=EY710870; organism=Citrus sinensis; type=EST; length=616bp
CCACGCGTCCGGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGGA
CCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGG
AAAGATTGACCTGTATGTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAA
TGGAGCAGGCAACCGATGCCTTGATCCAACTAATAAAGGATCACGGGCGC
TGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGTAATTTCCATCAACAG
ATATACAATAAAGACTCAGTTGAAGGGAGACCACCATACCCCAGCTGTTG
TATATTAAATTCCACATGGCACAAAAGACTACACAGTAATAGCAGATCAT
ATAAATTTTTCCGTCAGATGGAGCATCTATAGTTCACCAAGGAAAGCGTT
ATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAACACTCCCATTAGTAA
CAAGTCCAATGTTTCCTACATTTTGTTTTCTTACACAAACCAAATAATAA
TGTATTTCCTATGGCATATATTAGCTTCTAGTGAAACCACTTGAGTTATG
TCTGTGGGTTTCTCTTCTATGAGAAATGTTTCAGAAAATATACCTTCCTT
GAAAAANAAAAANNAA
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