EY710863

Overview
NameEY710863
Unique NameEY710863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710863_ssr49 microsatellite EY710863_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.682e-42
Identity = 103/198 (52.02%), Postives = 118/198 (59.60%), Query Frame = 3
Query:  132 SNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXXXXXXXXXXXEHKPSL---GPAPFILGKRVRSDDDGTKGEDSISAGGPANGGPIMGPATPGGGSWALPGRPDFWQAWSF 716
            +N+DG     SNGA+I+   QQP    ++ VKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE               FST SVS+RG  N                 +HKP+    G +PFILGKRVR+D+D     +  S G            T   G WA+P RPDF Q WSF
Sbjct:   12 NNNDGLMIS-SNGALIE---QQP----SVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATN-------------STSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHSSVGKDETF------TTTPAGFWAVPARPDFGQVWSF 182          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.859e-41
Identity = 116/271 (42.80%), Postives = 136/271 (50.18%), Query Frame = 3
Query:  129 MSNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXXXXXXXXXXXEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAGGPANGGPIMGPATPGGGS----WALPGRPDFWQAWSFPAPAAPDMWGAGAFHKSIIFI-----STATQFVLQQLWERLRG*RGNYFRAS--TLLGSFRGAANLGRKRK 908
            M+++DGA   VSNG I++    + P N   AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE               FST S+S                               +PF LGKRV   ++G  G      GG    G  MG +  GGG     WA+P RPDF Q WSF   A P+M  A     + +F+       A+      + E      GNY       LL S  G AN   +R+
Sbjct:    1 MADNDGA---VSNGIIVEQTSNKGPLN---AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLST-----------------------------SSPFTLGKRVVRAEEGESGG---GGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFGQVWSFATGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMGEASAARVGNYLPGHHLNLLASLSGGANGSGRRE 233          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23
Identity = 64/128 (50.00%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  132 SNSDGAANGVSNGA--IIDPQ-----RQQPPGNGALAVK---------KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 467
            +N+D AA     GA  ++D       R  PP +  LA           K  +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               FST+SVS+R  G+
Sbjct:    9 NNNDTAAVATGGGARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLSVSLRSSGS 136          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.284e-23
Identity = 61/119 (51.26%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  117 PGAHMSNSDGAANGVSNGAIIDPQRQQPPGNGALAVK---KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGG 464
            PG+    S G    +S  A          G+    VK   K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               FST++ S+R GG
Sbjct:   22 PGSIPFISSGQHGNISTSATSSTSTSS--GSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSGG 138          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.525e-22
Identity = 58/115 (50.43%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  123 AHMSNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 467
            AH+  S G  +G  +     P         A    K PSKDRH KVDGRGRRIRMP ICAARVFQLTREL HKSDG+TIEWLL+QAE                ST+++S+R  G+
Sbjct:   17 AHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANISTLNISLRSSGS 131          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.525e-22
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  207 NGALAVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 467
            +  +A KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               F+++++S+R  G+
Sbjct:  102 SAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGS 193          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.137e-21
Identity = 55/119 (46.22%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  111 ILPGAHMSNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 467
            I+P A      G     +   +   +++     GA A  K P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAE               FS+++VS+R   +
Sbjct:  112 IVPAAAAPGGGGGQVQAAAAPVASSEKKAVVAAGAGA--KRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSSLAVSLRSAAS 228          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.086e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 3
Query:  225 KKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVR 455
            KKPP     +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               F+++++S+R
Sbjct:   43 KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLR 124          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.602e-19
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 3
Query:  216 LAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            L  K+  +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+QAE
Sbjct:   71 LGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 126          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 3
Query:  219 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            A K+P SKDRH+KV+GRGRRIRMP  CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct:   51 APKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105          
The following BLAST results are available for this feature:
BLAST of EY710863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCP7_ARATH1.682e-4252.02Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP21_ARATH1.859e-4142.80Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.339e-2350.00Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP22_ARATH2.284e-2351.26Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
TCP23_ARATH2.525e-2250.43Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
TCP14_ARATH2.525e-2256.52Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ2.137e-2146.22Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP15_ARATH3.086e-2059.76Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP20_ARATH7.602e-1975.00Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP19_ARATH9.928e-1980.00Transcription factor TCP19 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710863 ID=EY710863; Name=EY710863; organism=Citrus sinensis; type=EST; length=913bp
TCCTCAAACACGCTTCCGCCCACGCGTCTTACATAAATAATTCTTACACT
CTCTCTCTCTAACACTCTTTTAACTACTTCAACATTCCCTACCGCTTTTA
TCTTCACCAAATTCTACCTGGTGCTCATATGTCTAATTCGGACGGTGCCG
CTAACGGCGTCTCCAACGGCGCTATTATTGACCCCCAGAGACAGCAGCCT
CCCGGTAATGGCGCGTTGGCCGTCAAGAAGCCGCCCTCCAAGGACCGCCA
CAGCAAGGTCGACGGCCGCGGCAGGAGAATCCGCATGCCGATCATTTGCG
CAGCGCGTGTTTTCCAGTTGACTCGCGAGCTCGGCCACAAATCCGACGGC
CAGACCATCGAGTGGCTTCTCCGCCAAGCCGAGCCCTCAATCATTGCTGC
CACGGGGACGGGTACCACTCCGGCTAGCTTCTCCACTGTCTCGGTGTCGG
TTCGCGGCGGAGGGAACTCGACTTCCTTGTCGTCGACGGTGTCTTCTTCG
GCTATCTCCGCTGCGTTGGAACATAAGCCCTCGCTTGGTCCCGCCCCGTT
CATTCTTGGAAAACGCGTGAGGTCCGACGATGATGGGACCAAAGGGGAAG
ATTCCATTTCTGCCGGGGGGCCTGCCAACGGGGGGCCGATAATGGGCCCT
GCAACTCCAGGCGGCGGGTCCTGGGCTTTGCCGGGCAGGCCGGATTTTTG
GCAGGCCTGGAGTTTTCCTGCACCTGCCGCCCCGGATATGTGGGGTGCAG
GGGCTTTTCACAAAAGCATCATCTTCATATCCACAGCCACCCAGTTTGTT
TTGCAGCAACTATGGGAAAGGCTCCGCGGCTAAAGGGGGAATTATTTCCG
GGCATCTACATTGCTGGGATCTTTCCGGGGGGCCGCGAATCTCGGTCGAA
AGAGAAAACCCCT
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