EY710855 | Citrus Genome Database

Overview


Name	EY710855
Unique Name	EY710855
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	928

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY710855_ssr159	microsatellite	EY710855_ssr159:159..170.	BLAST: Citrus ESTs to Prunus persica proteins V1
EY710855_ssr89	microsatellite	EY710855_ssr89:89..112.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL4_HUMAN (DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.579e-18
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA  +  ++ PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ DT  KL+  L  L   +   TNF+  Y +AF +   E+  +S+DI +   +LG +L
Sbjct:  110 FYEYAG-TDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFA-REKDQRSLDINTAKCMLGLLL 225

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL4_MOUSE (DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA      + PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ DT  KL+  L  L   +   TNF+  Y +AF +   E+  +S+DI +   +LG +L
Sbjct:  110 FYEYAGTEDA-VGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRTTLDYLRSLLNDTTNFKLIYRYAFDFA-REKDQRSLDINTAKCMLGLLL 225

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL4_DANRE (DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16
Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ D+  KL+ +L  L   +   T+F+  Y +AF +   E+  +S+D+ +   +LG +L
Sbjct:   98 FYEYAG-CDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQSMGYFTLQEWLKGMGSLQCDSTEKLRNSLDYLRSVLNDATSFKLIYRYAFDFA-REKDQRSLDLNTAKCMLGLLL 213

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL5_RAT (DCN1-like protein 5 OS=Rattus norvegicus GN=Dcun1d5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   ++ +L+LAWK++AE  G+FT EEW +G+ +L+ D   KL+     L  ++   ++F++ Y +AF +   +++ +S+DI++   +L  +L
Sbjct:   55 FYEYAGPDE-VVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQSRFDFLRSQLNDISSFKNIYRYAFDFARDKDQ-RSLDIDTAKSMLALLL 170

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL5_PONAB (DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   ++ +L+LAWK++AE  G+FT EEW +G+ +L+ D   KL+     L  ++   ++F++ Y +AF +   +++ +S+DI++   +L  +L
Sbjct:   55 FYEYAGPDE-VVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQ-RSLDIDTAKSMLALLL 170

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL5_MOUSE (DCN1-like protein 5 OS=Mus musculus GN=Dcun1d5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   ++ +L+LAWK++AE  G+FT EEW +G+ +L+ D   KL+     L  ++   ++F++ Y +AF +   +++ +S+DI++   +L  +L
Sbjct:   55 FYEYAGPDE-VVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQSRFDFLRSQLNDISSFKNIYRYAFDFARDKDQ-RSLDIDTAKSMLALLL 170

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL5_HUMAN (DCN1-like protein 5 OS=Homo sapiens GN=DCUN1D5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   ++ +L+LAWK++AE  G+FT EEW +G+ +L+ D   KL+     L  ++   ++F++ Y +AF +   +++ +S+DI++   +L  +L
Sbjct:   55 FYEYAGPDE-VVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQ-RSLDIDTAKSMLALLL 170

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL5_BOVIN (DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2

Query:  353 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIESVCEILGSVL 706
            FY YA     ++ PEG+E  C DI V   ++ +L+LAWK++AE  G+FT EEW +G+ +L+ D   KL+     L  ++   ++F++ Y +AF +   +++ +S+DI++   +L  +L
Sbjct:   54 FYEYAGPDE-VVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQ-RSLDIDTAKSMLALLL 169

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL3_XENTR (DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2

Query:  332 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEK 655
            ++RI+ LF+ Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT  E+  G KA+ AD +  +    P L  E K+   F+D Y F F++ L  E+
Sbjct:   87 VQRIEELFWRYKDEREDAILEEGMERFCNDLYVDPTEFRVLVLAWKFQAATMCKFTRREFFEGCKAINADGIEGICARFPSLLNEAKQEDKFKDLYRFTFQFGLDSEE 194

[Close]

BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL3_RAT (DCN1-like protein 3 OS=Rattus norvegicus GN=Dcun1d3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 2

Query:  278 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEK 655
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L  E+
Sbjct:   70 TSSGDAGRESKTNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEE 195

The following BLAST results are available for this feature:

BLAST of EY710855 vs. ExPASy Swiss-Prot

BLAST of EY710855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23


Match Name	E-value	Identity	Description
DCNL4_HUMAN	6.579e-18	39.83	DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=...	[more]
DCNL4_MOUSE	1.466e-17	39.83	DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=...	[more]
DCNL4_DANRE	1.621e-16	37.29	DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4...	[more]
DCNL5_RAT	1.050e-15	33.90	DCN1-like protein 5 OS=Rattus norvegicus GN=Dcun1d...	[more]
DCNL5_PONAB	1.050e-15	33.90	DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=...	[more]
DCNL5_MOUSE	1.050e-15	33.90	DCN1-like protein 5 OS=Mus musculus GN=Dcun1d5 PE=...	[more]
DCNL5_HUMAN	1.050e-15	33.90	DCN1-like protein 5 OS=Homo sapiens GN=DCUN1D5 PE=...	[more]
DCNL5_BOVIN	1.050e-15	33.90	DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 ...	[more]
DCNL3_XENTR	1.981e-14	36.11	DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1...	[more]
DCNL3_RAT	4.413e-14	32.54	DCN1-like protein 3 OS=Rattus norvegicus GN=Dcun1d...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-001-A04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710855 ID=EY710855; Name=EY710855; organism=Citrus sinensis; type=EST; length=928bp
TTCCCAAAACACGCGTCCGATTAAATTAATTAAAATAAAATAAATCTCTC
TCTAGAAATTGGCGCTCCGTCAGCCAGAGACAACCATTCAGCCAGCCAGC
CAGCCAGCCAGCAAGCAAAAAATCAAAAAAGCAAAAGCAACAGAGAGCGT
GATCATCATCGTCGTCGTCGAATCATATTATAAGCTTTTAAATTAAAAGA
GCGACGAAGCTTCTTCGTTCGCTCTCCCATCCGACATGCGTCGTTCTGTA
TCGAGAAAAACGGGTCAAACTAATTCAACCGACGCCACGGATCTCTTTCG
CTCCGCCTCAAGTAAAGCATCTTCGAAAGAGATGGAACGAATCGATAACC
TGTTTTATTCGTATGCGAATAAGTCTTCTGGCATGATTGACCCAGAAGGA
ATTGAAAGTCTGTGTTCAGATATCGAAGTCAGTCATACTGATGTTCGGAT
CTTGATGCTTGCTTGGAAAATGAAAGCGGAAAAGCAAGGGTATTTTACTC
TGGAGGAATGGCGGAGAGGCCTAAAAGCATTGAGGGCTGACACTGTAAAT
AAATTAAAGAAGGCCCTTCCTGATCTGGAGAAAGAGGTGAAGAGGCCAAC
AAACTTTCAAGATTTCTATGCTTTTGCATTCCGGTATTGCTTAACAGAGG
AGAAAACAAAGAGTGTAGACATAGAGAGTGTCTGCGAAATACTGGGGTCT
GTATTATGATNCCAATACCGTGCCAGGNTGACTATTTGATTGAGTATCTA
AAGATTCAATCTGATTATAAGGAAATAACATGGATCAGTGGATGGGGTTT
TACCGGGTCTGCAATGAGATAGCTTCCCGGGCTTCAATAATACGATCCAA
ATCTGCTTGGCCCTGGGCCTGGACAATTTGTAGAGTGATAAAGCGAACCA
ACTTAACTCTGGGTCTTTAACCGACTGA