EY679609

Overview
NameEY679609
Unique NameEY679609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.114e-62
Identity = 118/183 (64.48%), Postives = 137/183 (74.86%), Query Frame = 2
Query:    8 SAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            + PSQLCS K G+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVE+D+TLA  +        LGCVVP+N  + +F  PC G QYN  G VVR
Sbjct:    9 TTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLA-TFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVR 190          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.034e-60
Identity = 115/185 (62.16%), Postives = 136/185 (73.51%), Query Frame = 2
Query:    8 SAPSQLCSRKGGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            S  +QL S +  +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA    + +    LGCVVPWN  + +F  PC G QYN  G VVR
Sbjct:    7 SPATQLGSSRSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAV-CTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVR 190          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.723e-59
Identity = 116/186 (62.37%), Postives = 138/186 (74.19%), Query Frame = 2
Query:    5 ASAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            ++ PSQLCS K GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA    + +    LGCVVP+N+ + +F  PC G QYN  G VVR
Sbjct:    8 SATPSQLCSSKNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAV-CTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVR 191          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.840e-58
Identity = 112/181 (61.88%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   14 PSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            PSQL + K G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA    + +    LGCVVPWN  + +F  PC G QYN  G VVR
Sbjct:   12 PSQLSAAKNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAV-CTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVR 191          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.117e-54
Identity = 114/186 (61.29%), Postives = 130/186 (69.89%), Query Frame = 2
Query:   14 PSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            PSQLCS K G+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA    + +    LGCVVPWN+ + +F  PC G QYN  G VVR
Sbjct:   11 PSQLCSSKSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAV-CTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVR 192          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.488e-54
Identity = 113/188 (60.11%), Postives = 135/188 (71.81%), Query Frame = 2
Query:    8 SAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            S  +QLCS K G+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA    + +    LGCVVP+N+ + +F  PC G QYN  G VVR
Sbjct:    7 SPVTQLCSSKSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAV-CTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVR 190          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 9.455e-54
Identity = 112/188 (59.57%), Postives = 133/188 (70.74%), Query Frame = 2
Query:    8 SAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            S  +QLCS K G+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA    + +    LGCVVP+N+ + +F  PC G QYN  G VVR
Sbjct:    7 SPVTQLCSSKSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAV-CTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVR 190          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.575e-51
Identity = 111/188 (59.04%), Postives = 128/188 (68.09%), Query Frame = 2
Query:    5 ASAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            AS P+QLC         SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA    + +    LGCVVPWN+ + +F  PC G QYN  G VVR
Sbjct:    9 ASNPTQLCR--------SRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAV-CTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVR 187          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.410e-49
Identity = 102/184 (55.43%), Postives = 118/184 (64.13%), Query Frame = 2
Query:    5 ASAPSQLCSRKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            AS P+QLC  +    C       KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA    + +    LGCVVPWN+ + +F  PC G QYN  G VVR
Sbjct:    9 ASNPTQLCRTRASSLC-------KPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAV-CTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVR 184          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.378e-35
Identity = 76/160 (47.50%), Postives = 96/160 (60.00%), Query Frame = 2
Query:   77 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  K+        LGCVVPW + + +F  PC G QYN  G VVR
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIE-KYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVR 167          
The following BLAST results are available for this feature:
BLAST of EY679609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
UCRIA_PEA1.114e-6264.48Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH3.034e-6062.16Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL5.723e-5962.37Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG2.840e-5861.88Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SOLTU1.117e-5461.29Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC2.488e-5460.11Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC9.455e-5459.57Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_ORYSJ2.575e-5159.04Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT2.410e-4955.43Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_VOLCA3.378e-3547.50Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679609 ID=EY679609; Name=EY679609; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCTCCTTCTCAGCTATGCTCACGCAAGGGTGGTATGTTCT
GTCCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACA
AAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGC
TGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCT
TGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACC
TTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAA
GGATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACG
GCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCCACCTAC
CTTGTTGTGGAACAAGACAAAACACTTGCCATCAAATGGAAATCAATGCT
GTCTGCACTCACCTTGGGATGTGTGGTGCCATGGAATTCCCCCAAAAAAA
GATTCAACTAACCCTGCACCGGATGCCAATACAATAAACATGGAACAGTT
GTGAGAAGGAACTGCACAATGTGACATGCGGATAGGACCATGACACACTC
TGAAATGAGTAAGGCAACTCACCATACACTAGACGGCAAACAATTACAGG
AATGCGAGAACCCCCAAGGCGGCGCAGAAACCCGGACACAGGGGCCTGGG
AAGAACGACAGACAAAAGACCGACCGCCGACAAGGAAAAATCAAAGCCGG
GCGGGAAAAAGAAAAAGGACGAGAGCAGCAAACACGGACAAGCATAACCC
AGATAATGAAGGCATCGATGAGCCACCGAAGCTCCACAGAAGAAAACCAC
CACCAACAGGACNCGAAAGAAACGACAAATAATACGAACTCATAAAGAGA
CGGGCAAGA
back to top