EY679604

Overview
NameEY679604
Unique NameEY679604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1008
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679604 vs. ExPASy Swiss-Prot
Match: NUD20_ARATH (Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.117e-56
Identity = 108/209 (51.67%), Postives = 144/209 (68.90%), Query Frame = 1
Query:   55 SSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKEGQKFLWMEKRSQVKSTFPGMLD 675
            SS+   + +R  R  +A+ +   S +FTWDDV    + EY+   SSDL G+FEKI  CNRGSE   EF PF+IE+Q+ GY H RF  +LR++ D+F +S N     R   +V LN  L+  ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +NGYVE++GQK LW+ KRS  KST+PGMLD
Sbjct:   34 SSSMSLSPLRHSRALSAATTVPISSSFTWDDVIETGRAEYN---SSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGKRSLSKSTYPGMLD 239          
BLAST of EY679604 vs. ExPASy Swiss-Prot
Match: NUD24_ARATH (Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.943e-56
Identity = 110/220 (50.00%), Postives = 145/220 (65.91%), Query Frame = 1
Query:   16 SLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKEGQKFLWMEKRSQVKSTFPGMLD 675
            +LI T   R S  S +      R L V+T  +S     +FTW+DVF  S+ EY P +SSDL G+ EK+  CNRG E   EF PF+IE+Q+ GY H  F  +LR ++D+F +S     ++G HV LN  L   +ERTR V  VIK L  + +IP I+NELYPV  +F +P FFS++RAAAPYFG+K YA+ +NGYVE++GQKFLW+ KRS  KST+PG LD
Sbjct:   20 ALIPTLQWRSSSSSRSPPLHISRVLSVETVPLSP----SFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFIPFVIEEQIVGYIHKGFTKYLRDFNDIFTFS-----QYGGHVTLNMMLDKPEERTRAVAHVIKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKFLWIGKRSLAKSTYPGKLD 230          
The following BLAST results are available for this feature:
BLAST of EY679604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUD20_ARATH3.117e-5651.67Nudix hydrolase 20, chloroplastic OS=Arabidopsis t... [more]
NUD24_ARATH6.943e-5650.00Nudix hydrolase 24, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679604 ID=EY679604; Name=EY679604; organism=Citrus sinensis; type=EST; length=1008bp
CCACGCGTCCGTAAGAGTTTAATTACCACATTTCCAGTACGTTTCTCTGT
TCACAGCTCAGCAAAATTAACTACTTCTATTCGCTCTTTACGAGTCGATA
CCGCTAGCATTAGCTACAGAAGCAGCTGTACCTTCACTTGGGACGACGTC
TTTCGAGTTTCTCAACCAGAATATTCCCCTGACGATTCCTCCGATCTCCG
TGGCTACTTCGAGAAAATCAAAATCTGCAATCGTGGCTCAGAAATGCAAT
CCGAGTTTTTTCCTTTTATCATCGAGGACCAAGTTGCTGGTTACACACAT
AATCGTTTCGCTAGTCACCTAAGGAAATACGACGACGTATTCATTTACTC
TGGGAACAACGGAGGTCGATTTGGCAGTCACGTGAAGTTAAACTCAAAGC
TGAAAACAGCCGATGAGAGGACGAGAGTTGTTGGAGAAGTGATTAAATGC
TTGGCTGAAGAAGAATTGATTCCAGATATACAAAATGAGCTCTATCCTGT
AGCGTCAACCTTTGGTTCTCCGATCTTCTTCTCGCTGGATCGTGCCGCTG
CTCCTTACTTTGGGATAAAGGCTTATGCAGTTCCCTTGAATGGTTATGTT
GAAAAAGAGGGGCAAAAATTTCTGTGGATGGAAAAACGAAGTCAAGTCAA
ATCTACTTTTCCGGGAATGCTTGATATTTCTAGCTGGGGGAAGGATTGCC
CCTGGTATTGCTTGTGGGGAAGAATATTACAAGGGAGGGCAAGGAGGAAG
CGGGGAATCCCCTAAAATCCTAATCCCAATAAAGCTAGACCCAGGGGGGG
AGCTGGTTTCCTATCCGGAAATTTAAGGGGGTTAATTTAAAAAAAGAAAA
TGGTTATTTTTTGTTTACCATTTTGGACCTCACCCGGGAGAAATTTTGGT
CCCTATGGGAGGCCAGGGGGAAAGGGTTATTAAAGGCGTGGGGGAACCCC
GCGGGCGCCCCCTATTTTCTCTCTCCCTCTCCTGGGGAGAAAAAAAAAGG
GTATAAAA
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