EY679603

Overview
NameEY679603
Unique NameEY679603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679603_ssr754 microsatellite EY679603_ssr754:754..765. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_HAEIN (Amidophosphoribosyltransferase OS=Haemophilus influenzae GN=purF PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.466e-17
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = -3
Query:   41 CRIVGVIRSVPVYQLM*ASLLQPQRRGQDAAGIST-SQGNQFNMYKAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESLYR 388
            C IVG++   PV + + A+L   Q RGQDAAGI T    N+F + KA+GL+ DVFH  +   L G + +G VRYPT+GSS S  E QPFYV    G+   HN N     EL E +++
Sbjct:    2 CGIVGIVSQSPVNESIYAALTLLQHRGQDAAGIVTVDDENRFRLRKANGLVSDVFHQEHMLRLQGNAGLGHVRYPTAGSS-SVSEAQPFYVNSPYGVTLVHNGNLTNSVELKEKVFK 117          
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_SHIFL (Amidophosphoribosyltransferase OS=Shigella flexneri GN=purF PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.265e-17
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = -3
Query:   44 CRIVGVIRSVPVYQLM*ASLLQPQRRGQDAAGISTSQGNQ-FNMYKAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESLY 388
            C IVG+   +PV Q +  +L   Q RGQDAAGI T   N  F + KA+GL+ DVF  R+ + L G   +G VRYPT+GSS S  E QPFYV    GI  +HN N     EL + L+
Sbjct:    2 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSS-SASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLF 116          
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_ECOLI (Amidophosphoribosyltransferase OS=Escherichia coli (strain K12) GN=purF PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.265e-17
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = -3
Query:   44 CRIVGVIRSVPVYQLM*ASLLQPQRRGQDAAGISTSQGNQ-FNMYKAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESLY 388
            C IVG+   +PV Q +  +L   Q RGQDAAGI T   N  F + KA+GL+ DVF  R+ + L G   +G VRYPT+GSS S  E QPFYV    GI  +HN N     EL + L+
Sbjct:    2 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSS-SASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLF 116          
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_PASMU (Amidophosphoribosyltransferase OS=Pasteurella multocida GN=purF PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.265e-17
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3
Query:   41 CRIVGVIRSVPVYQLM*ASLLQPQRRGQDAAGIST-SQGNQFNMYKAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESLYR 388
            C IVG++   PV Q +  +L   Q RGQDAAGI T    N+F + KA+GL+ DVF   +   L G + +G VRYPT+GSS S  E QPFYV    G+   HN N     EL E L+R
Sbjct:    2 CGIVGIVSQSPVNQSIYDALTLLQHRGQDAAGIVTVDDENRFRLRKANGLVSDVFEQVHMLRLQGNAGIGHVRYPTAGSS-SVSEAQPFYVNSPYGLTLVHNGNLTNSSELKEKLFR 117          
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_PSEAE (Amidophosphoribosyltransferase OS=Pseudomonas aeruginosa GN=purF PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = -3
Query:   35 CRIVGVIRSVPVYQLM*ASLLQPQRRGQDAAGISTSQGNQFNMYKAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESLYRVD 388
            C IVG++    V Q +  +L   Q RGQDAAGI T   ++  + K +GL+RDVF  R+ + L G+  +G VRYPT+GSS+S  E QPFYV    GI  +HN N     +L + +Y  D
Sbjct:    2 CGIVGIVGKSNVNQALYDALTVLQHRGQDAAGIVTCHDDKLYLRKDNGLVRDVFQQRHMQRLIGSVGIGHVRYPTAGSSSS-AEAQPFYVNSPYGITLAHNGNLTNVEQLAKEIYESD 118          
BLAST of EY679603 vs. ExPASy Swiss-Prot
Match: PUR1_SCHPO (Amidophosphoribosyltransferase OS=Schizosaccharomyces pombe GN=ade4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = -3
Query:   47 QRRGQDAAGISTSQGNQFNMY--KAHGLLRDVFHTRNKRPLPGTSFVGQVRYPTSGSSASEEEPQPFYVFLRGGIIFSHNCNPFKGGELHESL 319
            Q RGQDAAGI T+ GN+  +Y  K  G++ DVF     R L G+  +G +RYPT+GS A   E QPFYV    G++  HN N   G EL   L
Sbjct:   28 QHRGQDAAGIVTA-GNKGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCA-HSEAQPFYVNSPYGLVLGHNGNLINGPELRRFL 118          
The following BLAST results are available for this feature:
BLAST of EY679603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PUR1_HAEIN1.466e-1745.30Amidophosphoribosyltransferase OS=Haemophilus infl... [more]
PUR1_SHIFL3.265e-1746.55Amidophosphoribosyltransferase OS=Shigella flexner... [more]
PUR1_ECOLI3.265e-1746.55Amidophosphoribosyltransferase OS=Escherichia coli... [more]
PUR1_PASMU4.265e-1746.15Amidophosphoribosyltransferase OS=Pasteurella mult... [more]
PUR1_PSEAE2.764e-1643.22Amidophosphoribosyltransferase OS=Pseudomonas aeru... [more]
PUR1_SCHPO5.395e-1246.24Amidophosphoribosyltransferase OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679603 ID=EY679603; Name=EY679603; organism=Citrus sinensis; type=EST; length=930bp
GGGGGCAGGGATAAGGGGTCGCGGAATTCCCGGGGTCGACGCGGTAGAGC
GACTCATGCAGCTCGCCCCCTTTGAATGGGTTGCAGTTGTGGGAGAATAT
GATGCCCCCCCTTAAGAAGACGTAGAACGGCTGGGGCTCTTCCTCGCTGG
CGCTGGAGCCGGAGGTGGGATAGCGGACCTGTCCCACGAACGAAGTGCCC
GGAAGGGGACGCTTGTTGCGCGTGTGGAATACGTCGCGCAGCAGGCCGTG
CGCCTTGTACATATTGAACTGGTTGCCTTGAGACGTCGAAATGCCTGCGG
CATCCTGCCCGCGACGCTGTGGCTGCAGCAAGCTGGCTTACATGAGCTGG
TAGACCGGCACGGACCTGATGACACCTACGATTCGACATGTGGGGAGATT
GCATGGTTAATGTGGATCTAATCAAACAGGCATAAACGACGCAAGAGAGG
GGGGGGAGCGGAGATTAGTTTGTTTGATAGGCTCAAGGGCGGATTCTGGA
GAATGTGAGTCTTGCACAGCAGTCTTGTGGCGACGGCTGGAACACGTGAG
GATAAAAAATGCTATTATGACAAGAAGAACCCATACACAACTAAACTTGA
AACAACGGTTATGTAATGACCAGTACACACACGATGAGCTAATCATGACA
ACAAGCTAATGAGTATTAAACCACGGCGAGAGACAAAGGACGGACGCGAG
TGCTAATAACCACCAATAGATGGTATAAGGCGAACACAGGAACGGGGGGG
GAAGAGGGAGGGAGGCGGCGGTACGGGGATCTATGGATTTGATTAGAAAC
ACAACACAAGATAATCTTTCGTGCAATAGAGTTATGCGACAATCCACCTA
ACATAGTGGACTACGATAACAACGGAGGTTGGAACGGCTGCGCTTAACAG
GGCCATCTTAGGCAGCGTGCAGAAGCTCAA
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