EY679602

Overview
NameEY679602
Unique NameEY679602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length979
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679602_ssr211 microsatellite EY679602_ssr211:211..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 388.267 bits (996), Expect = 3.702e-107
Identity = 186/225 (82.67%), Postives = 203/225 (90.22%), Query Frame = 2
Query:  128 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDQSVVLWSVQEHVSALAAEPGSAKS--PASGGANSKNGFQKWGGRGI 796
            SVD++Y+QWK LVP+LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE QPNRHAVLGAA+SRPDLILTGHQDNAEFALAMCPTEP+VLSGGKD+SVVLWS+Q+H++ +  +  S+ S    +G    KN     G RG+
Sbjct:   63 SVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTDSKSSGSIIKQTGEGTDKNESPTVGPRGV 287          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.513e-84
Identity = 152/226 (67.26%), Postives = 180/226 (79.65%), Query Frame = 2
Query:  128 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDQSVVLWSVQEHVSALAAEPGSAKSPASGGANSKNGFQKWGGRGINPQ 805
            +VDD Y+QWK+L+P+LYD   NH LVWPSLSCRWGPQLEQA  K  QRLYLSEQT+GSVPNTLVIANCE V           Q NE+A SPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTDSPD+LIW+ E QP+R+AVLGA DSRPDL+L GHQD+AEFALAMCPTEP+VLSGGKD+SV+LW++Q+H++   ++   +KSP S    +  G  K GG  + P+
Sbjct:   53 TVDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSKT-QRLYLSEQTNGSVPNTLVIANCETVN---------RQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SKSPGSSFKQTGEGSDKTGGPSVGPR 265          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.486e-20
Identity = 63/197 (31.98%), Postives = 100/197 (50.76%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+  W P  E+ + K+   Q++ L   T  + PN L++A  ++    +  AE+ ++  ++ RS F         V+  + I H GEVNR R +PQN  I+AT T S +V ++D    P++  + GA +  PDL L GH             + ++LSG  D  + LW +
Sbjct:   17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNYLMLAQVQLP---LEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACN--PDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICLWDI 208          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 64/197 (32.49%), Postives = 98/197 (49.75%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+  W P  E+ + K+   Q++ L   T  S PN L++A  +V  P         Q++++ RS F         V+  + I H GEVNR R +PQN  I+AT T + +V ++D    P++  + GA +  PDL L GH             + ++LSG  D  + LW +
Sbjct:   17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLA--QVQLPLDDTESEARQYDDD-RSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACN--PDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDI 208          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.908e-19
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA----TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDQSVVLWSV 688
            V++ ++ WK   P LYD L +H L WPSL+  W P         +Y    +L L   T GS  + L++A  +VV P   A   I   N++   P V+  + I   GEVNR R +PQ   +V   T   +V ++D      +HA     ++  PDL L GH D   + L+  P  E Y+LSG +DQ + LW V
Sbjct:   14 VEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLMVA--DVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYA----KHAAKSQTSECDPDLRLVGH-DKEGYGLSWSPFKEGYLLSGSQDQKICLWDV 198          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: HAT2_CRYNE (Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans GN=HAT2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.960e-19
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 2
Query:  128 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA--TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAA-----------EHISQFNEEARSPF-VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDQSVVLWSVQ 691
            +++++Y  WK   P LYD +  H L WPSL+C+W P +     T    QRL +   T G   + L+IA  EV+ P+  A            E   +      SP  ++  +TI H GEVNR R +PQN +++AT T + +V ++D     ++    G  + +PD+ L G              E ++LS  +D ++  W +Q
Sbjct:   24 AINEQYKVWKKNTPFLYDTVITHALTWPSLTCQWLPDITDVPDTDYTSQRLIIGTHTSGQANDHLIIA--EVLLPKKGAGISDKALADLYDEEKQEIGSYTASPARIRAIQTINHAGEVNRARYMPQNPELIATKTVTGEVYVFDRTKHESKAPANG--ECKPDIRLKGQTKEGYGLSWNALKEGHILSASEDTTIGHWDIQ 221          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: RBBP7_DANRE (Histone-binding protein RBBP7 OS=Danio rerio GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.354e-18
Identity = 66/198 (33.33%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E  + F         ++    I H GEVNR R +PQN  I+AT T + DVL +D    P++    G  D  PDL L GHQ    + L+  P     +LS   D ++ LW +
Sbjct:   16 INEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGKDYVVHRLVLGTHTSDE-QNHLVIASAQI--PNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLAFDYTKHPSKPDPSG--DCSPDLRLRGHQKEG-YGLSWNPNLSGNLLSASDDHTICLWDI 207          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 1.222e-17
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  +  PDL L GHQ    + L+  P    ++LS   D ++ LW +
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLWDI 207          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.222e-17
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  +  PDL L GHQ    + L+  P    ++LS   D ++ LW +
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLWDI 207          
BLAST of EY679602 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.222e-17
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  131 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDQSVVLWSV 688
            +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  +  PDL L GHQ    + L+  P    ++LS   D ++ LW +
Sbjct:   17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLWDI 207          
The following BLAST results are available for this feature:
BLAST of EY679602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MSI4_ARATH3.702e-10782.67WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH1.513e-8467.26WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
MSI1_SOLLC4.486e-2031.98WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH1.305e-1932.49WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
MSI2_ARATH2.908e-1934.38WD-40 repeat-containing protein MSI2 OS=Arabidopsi... [more]
HAT2_CRYNE4.960e-1929.70Histone acetyltransferase type B subunit 2 OS=Cryp... [more]
RBBP7_DANRE9.354e-1833.33Histone-binding protein RBBP7 OS=Danio rerio GN=rb... [more]
RBBP4_MOUSE1.222e-1733.50Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN1.222e-1733.50Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK1.222e-1733.50Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679602 ID=EY679602; Name=EY679602; organism=Citrus sinensis; type=EST; length=979bp
CAAATAGAGACAAAAGCAGCAGCATAAGCAGAGGCGGGAAAGCCGAAAGC
ACAGGGAAAAAATTTAGAAAAGAAAAGGAAATAAGCAGAAGGGAAAAATG
AAGGAGGGACGCAAAGGAATGGAAAGATCGGTTGATGATAGATACACACA
ATGGAAGTCCTTAGTTCCTGTGCTCTATGACTGGCTCGCCAATCACAACC
TCGTTTGGCCCTCTCTCTCTTGCAGATGGGGTCCACAACTTGAGCAAGCT
ACATACAAGAATCGCCAACGTCTTTACCTTTCTGAACAGACGGATGGCAG
TGTTCCAAATACTCTTGTAATAGCAAACTGTGAGGTTGTCAAGCCTCGAG
TTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCACCC
TTTGTAAAGAAATTTAAAACAATCATACATCCTGGCGAGGTGAACAGAAT
AAGAGAACTCCCACAGAACAGTAAAATAGTAGCCACACACACTGATAGTC
CTGATGTCCTCATTTGGGATGTTGAGGCACAACCTAATCGCCATGCTGTC
TTAGGAGCTGCTGATTCTCGTCCAGATCTGATATTGACCGGCCATCAAGA
TAATGCTGAATTTGCTCTGGCCATGTGTCCAACTGAACCCTATGTGCTCT
CTGGAGGCAAGGATCAGTCAGTGGTTTTATGGAGCGTCCAAGAACATGTC
TCGGCCTTGGCAGCAGAACCAGGTTCTGCAAAATCACCAGCTTCTGGTGG
TGCCAACTCTAAAAATGGCTTCCAAAAGTGGGGGGGAAGGGGGATAAACC
CTCAAAAAAAGCCCTTTCTTTTTGGGGCACCAAGGGAAAATACCTAGGGG
CAAGGAAAAACCCTGTTTGAAAAACCTTTCCTTTTTCGTTCCCTTCAAGG
GTTTTTTCTCCTTTTTTTTAACCCCGTGGCCTTTTGGGGGGCATATTGTA
GACCAAGGGGGGAAATTTTTTCCTTTTTT
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