EY744218

Overview
NameEY744218
Unique NameEY744218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744218_ssr488 microsatellite EY744218_ssr488:488..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.411e-18
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEP 222
            RP+DQP+VLFGRTFSDRE                  GS+L+SA+M+G A++CAHGAFR PEDLFLDEQEP
Sbjct:  126 RPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.923e-18
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 228
            RPSDQP+V+FGRTFSDRE                  GSLL SALM+G AIVC HGAF VP+DLFLDEQEP N
Sbjct:  116 RPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187          
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 44/72 (61.11%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 228
            RPSDQP+V+ GRTFSDRE                  GSLL SALM+G  IVC HGAFRVPEDLFLD+QEP N
Sbjct:  119 RPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190          
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 44/72 (61.11%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 228
            R SDQP+VLFGR+FSDRE                  GSLL SAL +G AIVC HGAFRVP+DLFLDEQEP N
Sbjct:  118 RSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189          
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 219
            RPSD+P++LFGR+FS+ E                  GS+LISALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:  126 RPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of EY744218 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   13 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 225
            RP+DQP+V+ GRTFSD E                  GSLL+S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:  116 RPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186          
The following BLAST results are available for this feature:
BLAST of EY744218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PR1B4_ARATH3.411e-1860.00PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH9.923e-1862.50PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH3.771e-1761.11PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH1.097e-1661.11PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH6.656e-1452.17PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH2.367e-1152.11PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744218 ID=EY744218; Name=EY744218; organism=Citrus sinensis; type=EST; length=553bp
CCACGCGTCCGCCGCCCTTCCGATCAACCCGTGGTCCTCTTTGGCCGTAC
GTTTTCCGACCGCGAAACGCTCGGCGCTCTTGTCGTTTTGACTATCGTTG
TCGTGTTCTTGACCAGCGTCGGATCCTTGTTGATCTCAGCGTTGATGGTC
GGAGCTGCGATCGTGTGTGCGCATGGTGCGTTTAGGGTTCCTGAGGATCT
GTTTTTGGACGAGCAAGAGCCCATCAATTCCGGATTCCTGTCGTTCCTCG
GTGGCGCCGCATCCGCCGCTGCCCCCTCGGTTGCGGCACGTGTCTGAAAT
GACTCGCCGGATCGTCAATGATCAAGCGAGAATGTGGTCAAGAAATGGAA
GGAACAGGTAGAAAGGTGCTGATTGAACCTCATTTAGTCATATTAAAGTA
AATGCAACTGATAGGATTTCTGTAATTAGATCTCATATTTGAAATCTACT
AAGGCACATGCTCGATATGCAGCAACAGTATTGAATGAATTTAATTTAAT
TTTCGGCAATTTTGATTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
back to top