EY659935

Overview
NameEY659935
Unique NameEY659935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4283 contig Csv1_Contig4283:342..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659935 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:   50 CQHCGISEKLTPAMPRGPAGPRTLCNACGLMWANKGTLRDLTKG----ARNICFEQHE---LETSSDI 232
            C+HCGI EK TP M RGPAGPRTLCNACGLMWANKG  RDL+K     A+N+   ++E   LET   I
Sbjct:  223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290
[Close]
BLAST of EY659935 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 2 
Query:   47 ICQHCGISEKLTPAMPRGPAGPRTLCNACGLMWANKGTLRDLTK 178
            +C+HCG SEK TP M RGP GPRTLCNACGLMWANKGTLRDL+K
Sbjct:  218 LCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261
[Close]
BLAST of EY659935 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:   50 CQHCGISEKLTPAMPRGPAGPRTLCNACGLMWANKGTLRDLTK 178
            C HCGIS K TP M RGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct:  214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
The following BLAST results are available for this feature:
BLAST of EY659935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT25_ARATH4.548e-1661.76GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH5.939e-1681.82GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT26_ARATH5.028e-1579.07GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659935 ID=EY659935; Name=EY659935; organism=Citrus sinensis; type=EST; length=763bp
TTTCTCAAACAGGCGTCCGAGTGCCCCTCTTGCATCCAACTCGCGAATAT
GTCAACACTGTGGGATAAGTGAGAAGTTGACTCCAGCAATGCCTAGGGGG
CCAGCTGGTCCAAGAACTCTTTGCAATGCATGTGGCCTTATGTGGGCAAA
CAAGGGAACCTTGAGAGATCTTACAAAAGGGGCAAGGAATATTTGTTTCG
AACAACATGAGCTGGAAACTTCTAGTGATATTAAGCCTGCAACAACAGAA
GCAGAAAATTCTTATGCCAACCAAGATGAACAGGGAAGTCCACACGAGAC
AAAGCCTGCACCCTTGGATCCTCAAAATCATTCCATGAGGTCAAATGAGC
AGTACTTGCTGGAAAGTGATGATGGTTTTGCATGTCCTTTGCCCATTCAA
GAAGACAACTCATTGATGAACCTTGATGACGAGGACTTGCAGGAAGCTAT
GGATGAGCTTGCCAATGCTTCTGGGTCAGATTTTGAGATCCCTTCAAATT
TTGATGAGCAGGTTGATGTTGATGATTCGAATTTGGGGACGGACTGGCTG
GACACTTGAAATCATGCCATTTGTTTGTAGACATATTAAAGTAATGCACA
CTTGGTTTGCCAAATGAAGTTCCTTTGCTGGTGTATACTAACATGATTAT
ACAGCCCAGAGCCAGGTTAGCCAGGTTATGTTCATAGTCAAAATAGAAAA
CATCTTCATGTACCTTGCTTTTGATATATAATGGAAATAGCTTTTTATAA
AAAAAAAAAAAAA
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