EY659922

Overview
NameEY659922
Unique NameEY659922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 5.132e-108
Identity = 196/218 (89.91%), Postives = 204/218 (93.58%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVALGVGGGXHCLLAQNKLW 815
            MVKMT+IARVTDGLPLAEGLDDGRDL D++MYKQQVKALFKNLSRGQN+ASRMS+ETGPYVFHYIIE RVCYLTMCDR+YPKKLAFQYLEDLKNEFERVNG  IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVA+  G        +NKLW
Sbjct:    1 MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_RAT (Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 99/203 (48.77%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_PONAB (Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 99/203 (48.77%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_MOUSE (Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 99/203 (48.77%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_HUMAN (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 99/203 (48.77%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_CHICK (Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.207e-49
Identity = 98/203 (48.28%), Postives = 140/203 (68.97%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL++EF+  +G ++ T +RPY+FI+FDT+IQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_CRIGR (Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.968e-48
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++  G   FHYIIE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: SC22B_XENTR (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.470e-46
Identity = 95/203 (46.80%), Postives = 138/203 (67.98%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE+ VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FD +IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L++ S+ Y   AK LN ++   K A VA+
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLN--EQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNYIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: S22BB_DANRE (Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.295e-46
Identity = 92/199 (46.23%), Postives = 133/199 (66.83%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGLDDGRDL-RDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 755
            MV +TMIAR+ DGLPLA  + +   + RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE+ VCYL +C+  +PKKLAF YLEDL+ EF   +G ++ T +RPY+FI+FDT+IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L+S S+ Y   AK LN ++   K A
Sbjct:    1 MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLN--EQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRSTYAKLA 197          
BLAST of EY659922 vs. ExPASy Swiss-Prot
Match: S22BA_DANRE (Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.595e-43
Identity = 91/203 (44.83%), Postives = 131/203 (64.53%), Query Frame = 3
Query:  162 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIERRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAL 767
            MV  TMI RV D LPLA  + +D +  RD + Y+ Q K L + L+  +   +R ++E G   FHY+IE+ VCYL +C+  +PKKLAF YLEDL+ EF    GA++ + +RPY+FI+FDT+IQKT K Y D+R +RN+  +N EL++V +IM  N++EVL  GE L  +   +S L+S S+ Y   AK LN ++   K A  A+
Sbjct:    1 MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLN--EQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRSTYAKVAAGAV 201          
The following BLAST results are available for this feature:
BLAST of EY659922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_ARATH5.132e-10889.9125.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
SC22B_RAT9.207e-4948.77Vesicle-trafficking protein SEC22b OS=Rattus norve... [more]
SC22B_PONAB9.207e-4948.77Vesicle-trafficking protein SEC22b OS=Pongo abelii... [more]
SC22B_MOUSE9.207e-4948.77Vesicle-trafficking protein SEC22b OS=Mus musculus... [more]
SC22B_HUMAN9.207e-4948.77Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
SC22B_CHICK9.207e-4948.28Vesicle-trafficking protein SEC22b OS=Gallus gallu... [more]
SC22B_CRIGR5.968e-4848.28Vesicle-trafficking protein SEC22b OS=Cricetulus g... [more]
SC22B_XENTR1.470e-4646.80Vesicle-trafficking protein SEC22b OS=Xenopus trop... [more]
S22BB_DANRE7.295e-4646.23Vesicle-trafficking protein SEC22b-B OS=Danio reri... [more]
S22BA_DANRE2.595e-4344.83Vesicle-trafficking protein SEC22b-A OS=Danio reri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659922 ID=EY659922; Name=EY659922; organism=Citrus sinensis; type=EST; length=911bp
TGCGGTACCGGTCCGGAATTCCTTCGATACAGAGGCGTNNGNTCTTTTCT
TTTCGTAAAAACGGGTCTTCTCTCTTCTTCAGATCGTTGAATTCGCGTAG
AAAATTTCAAACCCAAAAAGGGTGATTTGGTGTAGCAGAGGAATTTTAAA
GTGAGGCAAAAATGGTGAAGATGACGATGATTGCCCGTGTTACTGATGGT
CTTCCATTGGCGGAGGGACTGGATGATGGTCGTGATTTGAGAGATGCTGA
GATGTACAAGCAACAAGTCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCC
AGAATGAGGCTTCAAGGATGTCAATTGAGACAGGACCTTATGTTTTCCAT
TATATCATTGAACGACGTGTTTGTTACTTGACAATGTGCGACCGTGCTTA
TCCCAAAAAGCTGGCCTTTCAATACTTGGAAGACCTCAAGAACGAATTTG
AGCGTGTTAATGGGGCTCAGATTGAAACTGCTGCCAGGCCTTATGCTTTC
ATAAAATTTGATACATTCATACAGAAAACAAAGAAATTGTACCAGGACAC
ACGTACCCAGCGGAATATTGCAAAGTTGAATGATGAACTTTATGAGGTCC
ACCAGATAATGACCCGGAATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAG
TTGGACCAGGTCAGTGAAATGTCCAGTCGGTTGACATCAGAGTCGCGCAT
TTATGCTGATAAGGCAAAAGATTTGAATCGACAGGCTTTAATTCGGAAAT
GGGCTCCTGTGGCATTGGGGGTTGGGGGTGGGNCTCATTGTCTTTTGGCT
CAAAACAAGCTATGGTGATTTCAGTGCCCCTATGCGGNTCTAATAGTGCA
CATTGTGCCTGGGGTCTCTGCCTCAATGTGGGTTGCTGGTGTCCTGGCTC
GGTGTCACACT
back to top