EY659915

Overview
NameEY659915
Unique NameEY659915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659915_ssr237 microsatellite EY659915_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659915 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.341e-14
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:  623 NNLHDPYNGLENWDITSVDPCSWRMITCSPDGYVSALGLPSQSLSGT*SRWIGNLTSCNQ 802
            N LHDP+   +NWD  SVDPCSW MI+CS D  V  LG PSQSLSGT S  IGNLT+  Q
Sbjct:   43 NELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQ 102
[Close]
BLAST of EY659915 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.356e-12
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 2 
Query:  623 NNLHDPYNGLENWDITSVDPCSWRMITCSPDGYVSALGLPSQSLSGT*SRWIGNLTSCNQWYCRITHFR-PYPASLGK 853
            N + D    L  WDI SVDPC+W M+ CS +G+V +L + S+ LSG  S  IG LT  +    +      P P+ LG+
Sbjct:   48 NKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQ 125

HSP 2 Score: 33.113 bits (74), Expect = 1.356e-12
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 3 
Query:  498 MEMKSYKF-----WRVGFLVLALIDICYATLSPAGINYEVVALVAVK 623
            ME+   KF     W   + VL  +    + LSP G+NYEV AL++VK
Sbjct:    1 MEISLMKFLFLGIWVYYYSVLDSVSAMDSLLSPKGVNYEVAALMSVK 47
The following BLAST results are available for this feature:
BLAST of EY659915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2239_ARATH2.341e-1463.33Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH1.356e-1239.74Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659915 ID=EY659915; Name=EY659915; organism=Citrus sinensis; type=EST; length=868bp
CATCAGGGCGCGTNNGAAGAAAACCTTTCAAGATAAAAGGNAAACAACAC
AGTTGCACAACCCACATGGATCACCCCAAATTTCATTCAGTAAACCAAAC
TCAGATCTCTAGGATCTCAGAATTTCAGGCTTGATGATGATACCTGTTTC
TTTCTCGAGAAAATTCACTTTCTTTTGCTCCTTGTGTCGGCCCGTATAGT
GCCTCATTCTACTTTGTTTCATTCGTTCTCCCAAACCTCTCTCTCTCTGT
TTTATCTCTACTGGAAACATTCAAGACACTGTTTTTATCAACTGGGTGTC
TGTTGTTTCCCATTCTTGAAGCGTAAGCGATAAAAAGTTCCTTTTTTTCT
TTTAAGTGGGTTCTGATTCTGAGAGGGAACTTTTTTGTTTTGGATAAGGC
AAAGCAAAGAAAAACATTTGACAGTTCACCTCATGTGAGAATGGCTGGTG
ATAATAGTTGTGGATACAGAGTGATGTTACTCGACTGAAAATAGACTATG
GAAATGAAGAGTTACAAGTTTTGGAGGGTGGGATTTTTGGTTTTGGCATT
GATAGATATTTGTTATGCTACTCTTTCTCCTGCTGGTATTAACTATGAAG
TGGTAGCTTTAGTGGCCGTTAAAACAATCTACATGACCCTTATAATGGTC
TGGAGAATTGGGATATCACTTCCGTGGATCCTTGTAGCTGGAGAATGATT
ACTTGTTCACCTGATGGCTATGTTTCTGCTCTGGGACTTCCTAGTCAGAG
CTTATCTGGGACCTAATCACGGTGGATTGGAAACCTCACCAGTTGCAATC
AGTGGTACTGCAGAATAACGCATTTCCGGCCCTATCCTGCTTCACTTGGG
AAGTGGGAGAGCTTCGAC
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