EY659868

Overview
NameEY659868
Unique NameEY659868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 54/185 (29.19%), Postives = 85/185 (45.95%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLGFNQTH 661
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G + ++
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSN 190          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K +C  + ISWNP           +G
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNPSSSRAHPPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVG 185          
BLAST of EY659868 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 54/180 (30.00%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  122 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFGLG 646
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W LQ E       V+     SC    ISWNP           +G
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNPSSSRAHPPMIAVG 185          
The following BLAST results are available for this feature:
BLAST of EY659868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_OSMMO7.783e-1629.19Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_XENTR3.862e-1529.44Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_PONAB3.862e-1529.44Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN3.862e-1529.44Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_DANRE3.862e-1529.44Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_BOVIN3.862e-1529.44Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA3.862e-1529.44Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA3.862e-1529.44Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_MOUSE1.917e-1430.00Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659868 ID=EY659868; Name=EY659868; organism=Citrus sinensis; type=EST; length=905bp
TTTCTAAACAGGGCGTCCGCACTGCGAGTTGCGAAAAAAATGTCATCTGT
GCTGTTGAAATTCACGGTTCACGGACATGGACAAAGCAGTCGCGACTCTT
GACAAAGGCACAACGAGCTCCTCGTGGAACTACTGTGGCCAGAGATTAGC
CACTGGTTCAACCGACGGCACTCTCTCCATCTTTGACTCACCTGACCCCT
CTTCTTCCTCATTCACCTGCAACCTCAAAACTAAGGTACATGCGGGTGCC
ATTTTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGGTTGCCTG
TATTTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTTGAAGATG
CACAGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCACTTCGACT
CAAGTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTGAAATTGGT
TGCTGCATACTCAGATGGCCATGTTAAAGTTTATGAGCTCCTAGATCCCT
TGATACTGAAAAATTGGCAACTTCAGGCTGAATTTCAGAATGCTATTGAT
TCTGTGACTATGTTTAGGAAGGCTTCATGCATATCGGCATCCATTTCTTG
GAATCCACAGAAGGGTGAAAACCAGGGATCTAGTTTTGGTCTCGGGTTCA
ATCAGACACACCACAAACTCATTCCCTCCAGGTATGGGGAGTTGATGAGG
CTCATAATAGATGGCTACCAGTGGCAGAGTTGGCTTTGCCTGAGGACAAG
AGTGATGAGGTTTATGCTGTAGCATGGGCACTAACATCGGCCGGCCATAT
GAGGTGATAGCTGGTGCCACTCAGAAAGGCATTGCCACTTGGCATGGTGN
AGCAACCCCGAAGTGGATGGAAGCTCTTATAAAGAAGTTGCATTGCTCCC
TGGCA
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