EY659857

Overview
NameEY659857
Unique NameEY659857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659857 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.872e-48
Identity = 105/229 (45.85%), Postives = 138/229 (60.26%), Query Frame = 3
Query:   51 KTSSPPPS---DEGYFHMYTDWAAMQAYYGPQVAIPPYHNSPIASGHAPQPYMWGPAHPMMPPYGTPYAAIYSTGGAHAHPAVPLGSHAHDHGVPTSTAAVTPLNTEAPTKTSGNADQGSAKKLKGLDGL*MSIGNASAESAEGGPQQMASQS-EAHRSTDGSDGNTLKAGQSRDKRTRQGTPIAGGHVNTDIQTTPVTADVNATADKVLPTDDAPTSVSGKPDGAVLS 725
            K SSPPP    D+   H+Y DWAAMQAYYGP+VA+PPY N  +ASG +P PYMWGP  P+MPPYG PYAA+Y+ GG +AHP VPL              A +P++ +   K+SG  + G  KKLKG D L MSIGN  A+S+EG  ++  SQS E   S+DGS+ N+ +A  +  KR R   P   G V  + Q++ V     A ++K+L    A   V+GK  G V+S
Sbjct:   14 KLSSPPPPAAPDQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPL--------------AASPMSMDTHAKSSGTNEHGLIKKLKGHDDLAMSIGNGKADSSEGEMERTLSQSKETEGSSDGSNENSKRAAVNGRKRGRDEAPNMIGEVKIETQSS-VIPSPRAKSEKLLGITVATPMVAGKVVGTVVS 227          
BLAST of EY659857 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.991e-47
Identity = 95/182 (52.20%), Postives = 119/182 (65.38%), Query Frame = 3
Query:   60 SPPPSDEGYFHMYTDWAAMQAYYGPQVAIPPYHNSPIA-SGHAPQPYMWGPAHPMMPPYGTPYAAIY-STGGAHAHPAVPLGSHAHDHGVPTSTAAVTPLNTEAPTKTSGNADQGSAKKLKGLDGL*MSIGNASAESAEGGPQQMASQSEAHRSTDGSDGNTLKAGQSRDKRTRQGTPIAGG 599
            S PP D+   H+Y DWAAMQAYYGP+VA+PPY+NS +A SGH P PYMW P H MM PYG PYAA+Y   GG +AHP +P+GS       P  T   T L+ + PTK++GN D G  KKLK  DGL MS+GN + E+     ++  + SE   STDGSDGNT  A + + KR+R+GTP   G
Sbjct:   18 SSPPVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQH-MMSPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDNGLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSREGTPTKDG 198          
BLAST of EY659857 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.184e-41
Identity = 93/219 (42.47%), Postives = 122/219 (55.71%), Query Frame = 3
Query:   51 KTSSPPPSDEGYFHMYT-DWAAMQAYYGPQVAIPPYHNSPIASGHAPQPYMWGPAHPMMPPYGTPYAAIYSTGGAHAHPAVPLGSHAHDHGVPTSTAAVTPLNTEAPTKTSGNADQGSAKKLKGLDGL*MSIGNASAESAE--GGPQQMASQSEAHRSTDGSDGNTLKAGQSRDKRTRQGTPIAGGHVNTDIQTTPVTADVNATADKVLPTDDAPTSVS 698
            K S     ++   H+Y  DWAAMQAYYGP+V IP Y+NS +A GHAP PYMW    PMM PYG PY      GG +AHP V +GS        +++   TPL  +AP  ++GN+D G  KKLK  DGL MSI N    SAE      + +  SE   S++GSDGNT    QSR KR +Q +P  G   ++   + P+  + N   D  + T   PT++S
Sbjct:   15 KPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHAPPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDAPANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNTTGGEQSRRKRRQQRSPSTGERPSSQ-NSLPLRGE-NEKPDVTMGTPVMPTAMS 231          
BLAST of EY659857 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 58/160 (36.25%), Postives = 81/160 (50.62%), Query Frame = 3
Query:  264 GGAHAHPAVPLGSHAHDHGVPTSTAAV-----TPLNTEAPTKTSGNADQGSAKKLKGLDGL*MSIGNASAESAEGGPQQMASQS-EAHRSTDGSDGNTLKAGQSRDKRTRQGTPIAGGHVNTDIQTTPVTADVNATADKVLPTDDAPTSVSGKPDGAVLS 725
            GG +AHP VP+GSH   HG+ TS A         L+ +A  K+S N+D+G          L MS+GN SA++ EGG     SQS +   STDGSD N     +   KR+R+ TP   G   + ++    T ++N  ++K +     P  V  K  G VLS
Sbjct:    3 GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGL---------LAMSLGNGSADNIEGGADHGNSQSGDTEDSTDGSDTNGAGVSERSKKRSRETTPDNSGDSKSHLRRCQPTGEINDDSEKAI-VAVRPGKVGEKVMGTVLS 152          
BLAST of EY659857 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16
Identity = 64/196 (32.65%), Postives = 86/196 (43.88%), Query Frame = 3
Query:   96 YTDWA-AMQAYYGPQVAIPPYHNSPIASGHAPQPYMWGPAHPMMPPYGT--PYAAIYSTGGAHAHPAVPLGSHAHDHGVPTSTAAVTPLNTEAPTKTSGNADQGSAKKLKGLDGL*MSIGNASAESAEGGPQQM-------ASQSEAHRSTDGSDGNTLKAGQSRDKRTRQGTPIAGGHVNTDIQTTPVTADVNAT 653
            Y DW  +MQAYYG      P+  SP+ S  +P PYMWG  H MMPPYGT  PY A+Y  G  +AHP++P+                 P N+  PT      DQ S KK KG           S + AEGG + +       AS S+   +   SD N   A Q      R+    + G +  D  +   T ++  +
Sbjct:   27 YPDWQNSMQAYYGGGGTPNPFFPSPVGSP-SPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPM-----------------PPNS-GPTNKEPAKDQASGKKSKG----------NSKKKAEGGDKALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKP---SFGQMLADASSQSTTGEIQGS 190          
The following BLAST results are available for this feature:
BLAST of EY659857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CPRF1_PETCR7.872e-4845.85Common plant regulatory factor 1 OS=Petroselinum c... [more]
GBF3_ARATH2.991e-4752.20G-box-binding factor 3 OS=Arabidopsis thaliana GN=... [more]
GBF2_ARATH4.184e-4142.47G-box-binding factor 2 OS=Arabidopsis thaliana GN=... [more]
TAF1_TOBAC3.566e-1636.25Transcriptional activator TAF-1 (Fragment) OS=Nico... [more]
GBF1_ARATH4.658e-1632.65G-box-binding factor 1 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659857 ID=EY659857; Name=EY659857; organism=Citrus sinensis; type=EST; length=781bp
TCGAACAACCCACGCGTCCGCAATGAAGATTGCACATACTTCAAGTCTGA
AAAACATCTTCACCTCCACCTTCTGATGAAGGCTATTTTCACATGTATAC
TGATTGGGCAGCTATGCAGGCTTATTATGGCCCCCAAGTTGCTATTCCGC
CATATCACAACTCACCCATTGCATCTGGTCATGCTCCTCAACCCTACATG
TGGGGCCCAGCCCATCCTATGATGCCACCATATGGAACGCCTTATGCAGC
CATCTATTCTACTGGAGGCGCCCATGCACATCCTGCTGTGCCTTTGGGAT
CACATGCACACGATCATGGAGTTCCAACCTCGACTGCTGCTGTTACCCCA
TTGAACACAGAGGCACCTACTAAGACCTCAGGAAATGCAGATCAAGGCTC
AGCAAAGAAGCTGAAAGGGTTAGATGGCCTGTGAATGTCAATAGGCAATG
CTAGTGCTGAGAGTGCTGAGGGCGGACCACAACAAATGGCGTCACAGAGT
GAGGCCCACCGGTCTACTGATGGAAGCGATGGGAATACATTGAAGGCAGG
ACAGTCTAGAGATAAAAGAACCCGACAGGGAACGCCAATTGCTGGAGGAC
ATGTGAATACTGATATCCAGACAACTCCTGTGACTGCTGATGTCAATGCT
ACTGCTGATAAGGTGCTACCTACAGATGATGCTCCTACTTCTGTGTCAGG
AAAACCCGATGGTGCTGTGCTATCTCGGCCATGACTACAAAACTTGAGCT
CAGGAATGCTCCTGCCATGAACGATACTGAA
back to top