EY659847

Overview
NameEY659847
Unique NameEY659847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4713 contig Csv1_Contig4713:129..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659847 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 51/118 (43.22%), Postives = 63/118 (53.39%), Query Frame = 2
Query:   20 RHAFPKNRARGSGGRFLNTKKVSASKRNLT-------------NNELDMSESEAHR-ENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 325
            RH     R RGSGGRFLNTKK+                     N + +MS  EAH  +N KD  STTS SDITS S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct:  219 RHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336          
The following BLAST results are available for this feature:
BLAST of EY659847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NFYA3_ARATH1.552e-1443.22Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659847 ID=EY659847; Name=EY659847; organism=Citrus sinensis; type=EST; length=594bp
TCAACAAAGAGGCGTCCGCCGCCATGCTTTTCCAAAGAACAGGGCAAGAG
GATCTGGCGGGCGTTTTCTCAACACAAAGAAGGTTTCAGCCTCCAAGCGT
AATCTAACAAACAATGAACTGGATATGTCAGAATCTGAAGCTCATCGCGA
GAACTACAAAGATGGTGGTTCCACCACGTCTTGTTCTGACATCACAAGTG
CCTCCAACAGTGAAGACATATTCCAGCAGCCGGAGTTTGGGTTCTCTGGC
TACTCTTCTATTGGCAGTCGAAGCATGCAAGGTTGTTCAGCTACTATGAA
TGGTGATGGCAACATTCATCGTTTCCTGTCCTCTGTCGATGGATGAGCCC
AGCATCGCTGGCTCGTCTCAGCTAGTCTGAATTCTGACATTCAGATGAAA
GAACAGGCTGCTGCTTTTCCCTTGGGAAGTCATCCTTGGCTCTTTAGTTT
AACTTTTCAAGTATTTTGTTCTCGTAGTTTCAACATCTTGTCAAAAACTG
CAATGGAGTTAAAAGTTTTTGTGATTTTAAGGTTGTTACTTGCATTATCC
GAAACTCAGATACAAGGATATTTCATTAAGATGGTCTACCGNNG
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