EY659845

Overview
NameEY659845
Unique NameEY659845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 3.933e-74
Identity = 141/231 (61.04%), Postives = 178/231 (77.06%), Query Frame = 1
Query:  253 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFVQIL*VY-YFVE*VG*KKELREATRLL 942
            RVQKLIASQSDPLLAKEIFDYAS+QPNFRHS S++LILILKLGR +YF+LIDD+L   +S  YP+T  +FTYLIK+YAE+ LP++ L TF  MLEFN  P PK LNRIL++LV+HR YL+ AF+LFKS+  HGV+PNT+SYN++M+AFC N   SIAY +  +M+ER V+PDV+SY IL+Q  C K QVN + +L +DM NKGFV     Y   +  +  K +LREA +LL
Sbjct:   53 RVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL 283          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.590e-21
Identity = 59/190 (31.05%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  295 AKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHY-PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            A   F +A R P+F HS  +Y IL+  LG +K F+L+ D LI  +  +Y  ++  +F  + + Y+ +NLP  A + F  M+EF  KP    L+++L  L   + ++  A + F  A   G++P+ K+Y+I++R +      S A  V  +M+ER  + D+ +Y  L+  LC    V+    + ++M N G
Sbjct:   85 AHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSL-CDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLG 273          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18
Identity = 54/203 (26.60%), Postives = 103/203 (50.74%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE-FNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKG 861
            V KL+ S+ +P  A  +FD A+R P + HS   Y  ++ +L   +  + +  I+  ++S+       +   +IK Y ++++PD+AL  F+ M E F C+P  +  N +L   V  + +++    LF      GV PN ++YN++++  C    +  A      M + G  PDV SY  ++  L    +++ + +L ++M  +G
Sbjct:   13 VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVK-VESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERG 214          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.795e-18
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  265 LIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSM-LEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGV-MPDVESYXILMQXLCXKSQVNRSSDLXEDMXNK 858
            L+  + DP    +IF+ AS+Q  F H+N+TY +L+  L R K F  +D IL  +K E      SLF  L++ ++ S+L D+ ++ F  + +    KP    ++  L LL+           L  + H  G+ PNT  +NI+++  C NG  + A+ V ++M   G+  P+  +Y  LM  L   S+   + +L EDM +K
Sbjct:   62 LMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISK 261          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.819e-18
Identity = 57/192 (29.69%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  283 DPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNK 858
            DP  A  +F +  ++  FRH   +Y  LI KL +++ F  +D IL  ++  +     SLF  LI+ Y ++   D+A+  F  +  F+C    + LN ++ +LV +   L  A   F  A    + PN+ S+NI+++ F     +  A  V  +M+E  V P V +Y  L+  LC    + ++  L EDM  K
Sbjct:   61 DPEEALSLF-HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDN-GELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKK 250          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.420e-17
Identity = 61/209 (29.19%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  253 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE----FNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFV 867
            ++ KL+    +   + E+F +   Q  +RHS   Y +LI KLG    F  ID +LI +K E      SLF  +++ Y ++  P    +T R MLE    ++C+P  K  N +LE+LV+  N  + A ++F       + P   ++ ++M+AFC       A ++ + M + G +P+   Y  L+  L   ++VN +  L E+M   G V
Sbjct:   80 QLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPG---QTTRLMLEMRNVYSCEPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 284          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.383e-16
Identity = 50/196 (25.51%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  256 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXE 843
            V K +  +S   LA   F   +    F+H+  T+ ++I KL        +  +L  +K + +  +  LF  +I +Y +  L +RA++ F  + EF C P  K  N +L+ L+   N ++  + +++   + G  PN  +YN++++A C N     A  +  +M  +G  PD  SY  ++  +C    V    +L E
Sbjct:   46 VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGE-NRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAE 240          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.336e-16
Identity = 48/207 (23.19%), Postives = 105/207 (50.72%), Query Frame = 1
Query:  253 RVQKLIASQSDPLLAKEIFDYASRQ-PNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVT--PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGF 864
            R+  +I  Q +  LA +IF YA +  P F H+  TY  ++ KL RA+ F  ++ ++  L++ + P+    +LF  L++ Y  +   + +++ F  + +F  K   + LN +L +L+ ++ +         S    G+ PN  + N++++A C       AY V  ++   G++P++ +Y  ++     +  +  +  + E+M ++G+
Sbjct:   51 RLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 257          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.336e-16
Identity = 56/211 (26.54%), Postives = 101/211 (47.87%), Query Frame = 1
Query:  268 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSML---EFNCKPLPKQLNRILELLVTHRN-------YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQM-VERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGFV 867
            I  + DP L   +F++AS+QP F H N +Y I I KLG AK +  +DDI+  + S  +    +L+  +I  + ++    RA+  FR M+      C+P  +  + + + L+   N       Y+     LF+     G+ P+  + N +++ +  +   + A  +  QM V     P+  +Y  L+  LC + +   + +L  +M  KGFV
Sbjct:  146 ITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFV 356          
BLAST of EY659845 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.857e-15
Identity = 51/204 (25.00%), Postives = 93/204 (45.59%), Query Frame = 1
Query:  253 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGGYSIAYTVXKQMVERGVMPDVESYXILMQXLCXKSQVNRSSDLXEDMXNKGF 864
            +  +++   +D   A   F +  RQP F+H   TY  ++  LGRAK F  I+ +L  +  +        +  LI  Y  +N  + A+  F  M E  CKP       +++ +     +L  A D+++     G+ P+T +Y++++      G    A+ +  +MV++G  P++ +Y I+M           +  L  DM N GF
Sbjct:  333 QANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID-IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535          
The following BLAST results are available for this feature:
BLAST of EY659845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PP298_ARATH3.933e-7461.04Pentatricopeptide repeat-containing protein At4g01... [more]
PPR78_ARATH6.590e-2131.05Pentatricopeptide repeat-containing protein At1g52... [more]
PP221_ARATH1.052e-1826.60Pentatricopeptide repeat-containing protein At3g09... [more]
PP392_ARATH1.795e-1831.00Pentatricopeptide repeat-containing protein At5g18... [more]
PPR20_ARATH6.819e-1829.69Pentatricopeptide repeat-containing protein At1g07... [more]
PP444_ARATH4.420e-1729.19Pentatricopeptide repeat-containing protein At5g64... [more]
PP270_ARATH6.383e-1625.51Pentatricopeptide repeat-containing protein At3g48... [more]
PP388_ARATH8.336e-1623.19Pentatricopeptide repeat-containing protein At5g16... [more]
PP173_ARATH8.336e-1626.54Pentatricopeptide repeat-containing protein At2g27... [more]
PPR49_ARATH1.857e-1525.00Pentatricopeptide repeat-containing protein At1g18... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659845 ID=EY659845; Name=EY659845; organism=Citrus sinensis; type=EST; length=950bp
CACTGGTCGCCTGCAGACCGGTCCGGATTCCCTGCTCAAAGAGGCGTCCG
GAGAATCGCTTACCCAAGAAAACGAGCATTTCTTCGTTCATCCAAAATCG
TCACAACGGTAACTGGAGCACCCACCTTCCCGCCAAAAACTCCATCACTC
ATCTTCTGCTACTCCTCATCTTCCCAAGAATCACCATCCTCACCAGAGCA
ACAACAAGAATCTTCCATTTCAAATTCCAAATCTCCAATCGGGTCTCCAT
GTCGAGTCCAAAAACTGATAGCCTCCCAATCAGACCCTCTCTTAGCCAAA
GAAATCTTCGATTACGCCTCTCGCCAACCCAATTTCCGCCACTCCAATTC
TACGTATCTCATTCTCATCCTCAAACTCGGCCGCGCTAAATACTTCTCTC
TCATTGATGATATTCTCATTACCCTCAAGTCCGAACACTACCCTGTCACC
CCCAGTCTTTTCACTTACTTAATAAAAATATACGCAGAATCCAATTTGCC
TGATAGAGCTCTCAAAACATTTCGCTCAATGCTTGAGTTCAACTGTAAGC
CTTTACCCAAGCAGTTAAATCGCATTCTTGAACTCCTTGTCACTCACCGG
AACTATCTCCGGCCCGCTTTTGATTTATTCAAGAGTGCTCATAAACACGG
TGTTTTGCCCAATACTAAATCCTACAACATCATGATGCGTGCGTTTTGTT
TTAACGGGGGATATAGTATCGCCTACACNGTGNTTAAACAAATGGTTGAG
AGAGGTGTTATGCCTGATGTCGAGTCGTATCNGATTTTGATGCAGGNTTT
GTGTANGAAGAGTCAGGTGAATAGAAGCAGTGATTTGNTGGAGGATATGN
TGAATAAAGGATTTGTACAGATACTTTGAGTATACTACTTTGTTGAATAA
GTTGGGTAGAAAAAAGAACTCCGGGAGGCTACAAGGCTCCTTGAAGATGA
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