EY659830

Overview
NameEY659830
Unique NameEY659830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7614 contig Csv1_Contig7614:1..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.045e-23
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  537 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNSSRR 842
            RSM++ E+      S  RPFF     D   D+ +D+    PEKKRRLT +QV  LEKSFE ENKLEP R+  LAK LGLQPRQVA+WFQNRRARWKT    R
Sbjct:   34 RSMMNMEET-----SKRRPFFSS-PEDLYDDDFYDDQL--PEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.899e-21
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  576 GSNNRPFFRPFDRDENGDEDFDEYFHQ---PEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            GSN +     +D D    E++    H     EKKRRL VDQV+ LEK+FE+ENKLEP R+  LA++LGLQPRQVA+WFQNRRARWKT    +    +   Y+SL
Sbjct:   27 GSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSL 130          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.434e-21
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            EKKRRL+V+QV+ LE+SFEVENKLEP R+  LA+DLGLQPRQVA+WFQNRRARWKT    R    + +SY+SL
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSL 122          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.434e-21
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            EKKRRL+V+QV+ LE+SFEVENKLEP R+  LA+DLGLQPRQVA+WFQNRRARWKT    R    + +SY+SL
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSL 122          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.439e-20
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  588 RPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNSSRR 842
            RPFF   D +   +E +DE    PEKKRRLT +QV  LE+SFE ENKLEP R+  LA+ LGLQPRQVA+WFQNRRARWKT    R
Sbjct:   55 RPFFTTPD-ELLEEEYYDEQL--PEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.439e-20
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  588 RPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNSSRR 842
            RPFF   D +   +E +DE    PEKKRRLT +QV  LE+SFE ENKLEP R+  LA+ LGLQPRQVA+WFQNRRARWKT    R
Sbjct:   57 RPFFTTPD-ELLEEEYYDEQL--PEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 138          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.186e-20
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  570 ANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            A     RPFF   + +   +E +DE    PEKKRRLT +QVQ LE+SFE ENKLEP R+  LA+ LG+ PRQVA+WFQNRRARWKT
Sbjct:   58 AGAGAKRPFFTTHE-ELLEEEYYDE--QAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKT 140          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.186e-20
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  570 ANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKT 827
            A     RPFF   + +   +E +DE    PEKKRRLT +QVQ LE+SFE ENKLEP R+  LA+ LG+ PRQVA+WFQNRRARWKT
Sbjct:   58 AGAGAKRPFFTTHE-ELLEEEYYDE--QAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKT 140          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.139e-20
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            EKKRRL+V+QV+ LE+SFE ENKLEP R+  LA+DLGLQPRQVA+WFQNRRARWKT    R    +  SY++L
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDAL 114          
BLAST of EY659830 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.139e-20
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 3
Query:  660 EKKRRLTVDQVQFLEKSFEVENKLEPRRENSLAKDLGLQPRQVAIWFQNRRARWKTNS-SRRIRCIANSYNSL 875
            EKKRRL+V+QV+ LE+SFE ENKLEP R+  LA+DLGLQPRQVA+WFQNRRARWKT    R    +  SY++L
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDAL 114          
The following BLAST results are available for this feature:
BLAST of EY659830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HAT5_ARATH4.045e-2357.84Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
ATB16_ARATH2.899e-2151.92Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX4_ORYSJ8.434e-2168.49Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI8.434e-2168.49Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX16_ORYSJ1.439e-2062.35Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI1.439e-2062.35Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX5_ORYSJ4.186e-2059.30Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI4.186e-2059.30Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX20_ORYSJ7.139e-2065.75Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI7.139e-2065.75Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659830 ID=EY659830; Name=EY659830; organism=Citrus sinensis; type=EST; length=940bp
GTCATCTTATTAACCGGNCCGGAATTCTTTCATAACACGCGCGTCCGTAN
GGGAATTAACAAAAAAAGATCCACTTCCACTTCCACTTCCACTTCCTCTT
CTTCTTGTCCTTTTTCCCCTCAAAAACTTCAAACTTCACACTTCTCCTGA
AACCTCTCACGAAACACTCTTTCAAATCCCTCTATTCTGAGTGATGGGTA
TGAGCAGCCGCTGCTCCCACACATCTCACATAACCGAGATCATAATCACC
AGCTTCTTTCGTCATAAGTCTTAAATTAAATTTCTTCTCGACTGTTGAAT
CATCGCATCATCTTTAGCGATGGCTGCTTAAAAGATTAAGAATATTAGTT
TTAAGTTAAATGGCGGGTGGGAGGATGTATAATCAAAATAGTTCTAGTGG
TGGTGGTAGTGGTGGTGGTACTTCAAGTCTGTCCTTTCTGATTCAAAGCC
AAAAGGGTTCTTGCTCTAACTCTCAGAATCTCGATGCTTCGTTCCTCTCT
GGCCCTTCTCCTTCTCCTTCTCCTTTTCTTGGATCAAGATCCATGGTGAG
CTTTGAAGATGTGCACTTAGCAAATGGATCCAATAACAGGCCATTTTTCC
GCCCATTTGATCGTGATGAAAATGGGGATGAGGACTTTGATGAGTACTTT
CATCAACCTGAAAAGAAAAGACGGCTTACGGTTGATCAAGTCCAGTTTCT
TGAAAAAAGCTTCGAGGTAGAGAACAAGCTTGAACCCCGAAGGGAAAATT
CACTGGCAAAAGACCTTGGCTTGCAGCCTAGACAGGTTGCGATTTGGTTC
CAAAACCGCCGGGCTCGTTGGAAGACTAACAGCTCGAGAAGGATACGATG
TATTGCAAACAGCTATAATAGCTTAGGGCGATATGACATCTCTTCAAGAG
AAGAAAGCTAAAGCTGAGGTCTTAGCTCACGACAGCTGCA
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