EY659807

Overview
NameEY659807
Unique NameEY659807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7508 contig Csv1_Contig7508:1..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   91 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 212          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 211          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 211          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 211          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 211          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.614e-34
Identity = 75/123 (60.98%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  513 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXV-EQGFTHINFRVYGDPSI 878
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTL    L   V  +        VYGDP +
Sbjct:   88 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEV 209          
BLAST of EY659807 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  516 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLTCXDLLSXVEQG---FTHINFRVYGDPS 875
            ILVTGGAGFIGSH+VDKL+EN   +VI+ DN  TG+K+N+     +P+ E +  D+ +  L E      V+ + H A   +      NPV     NV+GT+   +++   +     F      VYG+P+
Sbjct:    2 ILVTGGAGFIGSHIVDKLIEN-NYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPN 124          
The following BLAST results are available for this feature:
BLAST of EY659807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UXS1_XENTR1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_RAT1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE1.614e-3460.98UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GALE_METJA1.919e-1136.43Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659807 ID=EY659807; Name=EY659807; organism=Citrus sinensis; type=EST; length=888bp
TTTCAAAAAGGCCGCGTCCGAATTTTTTTTTCAAAAAAGAATGGTATATA
TAATCTGTTTTTATTATGGTTATCGAGCAGCTTTCATCCAAAAACATAAC
TTTTCGTAATATTGAAGGCTCCAAGTTTGTTAATTTATTTATTGGTTTTT
CTTTTTTCTTTTTTAATTTGCCATTTGGTGAAAGAAGTTTCGATTTTTAA
GGACAGTTTTTGATTCTATAAATAAGGAGTCTCTGATCTTGAGCTTTTGT
GGATCAAAACAGCGACTTAGTTCAGTTCTTTTTTCCTCAGAAACGAACGT
TCTCTCATTTGCGCTTTCTTATGTTAAATTTGGATCCTGTTTATGAATCT
GTGAGGAAAAATTGATGTGGGTGTGTTTGAAAATATTGATAGGTATTGAA
TTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACAA
CTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTT
CAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTC
TCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCG
CTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGT
CACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGAT
CGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCT
ACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTA
ACATGCTANGACTTGCTAAGCGANGTGGAGCAAGGATTTACTCACATCAA
CTTCAGAGTTTATGGTGATCCCTCTATTCCCCTCAACT
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