EY659765

Overview
NameEY659765
Unique NameEY659765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8317 contig Csv1_Contig8317:49..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659765 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 47/98 (47.96%), Postives = 55/98 (56.12%), Query Frame = 2 
Query:   89 ASPVYGMPAMATTRGRVRCSLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 382
            +SP+ G+P+M T R +V CS+E                                     VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:   28 SSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123
[Close]
BLAST of EY659765 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 45/99 (45.45%), Postives = 53/99 (53.54%), Query Frame = 2 
Query:   89 ASPVYGMPAMATTRGRVRCSLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 385
            ++PV G+P M   +G VRCS+E                                     VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:   27 SAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120
[Close]
BLAST of EY659765 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  266 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 385
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110
The following BLAST results are available for this feature:
BLAST of EY659765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL1.186e-1647.96Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH1.549e-1645.45Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.357e-1282.50Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659765 ID=EY659765; Name=EY659765; organism=Citrus sinensis; type=EST; length=571bp
TTCGTCGACCCCGCGTCCGATCAATTTCTTCCCCAACTTTCCTGCATTGC
TTCCAAGATCAGGTTTTGTGCCCAAGGGCTTAACTCACGCATCACCAGTC
TATGGAATGCCTGCAATGGCAACAACAAGGGGACGTGTGAGATGCAGCTT
AGAGGAAAAGGCACCAGCTGCTGCCAGCGGCAAGAGCTCAAAAGCAAGCA
TGGTTGCATCACTTATGGCAGCCGCCGCAGCCTTGAGTACGGCCGCAGGG
CCAGCCATGGCGTTGGTGGATGAGAGAATGACCACAGAAGGAACAGGGCT
TCCATTTGGACTAAGCAACAACACTCTTGGGTGGATTCTCTTTGGTGTGT
TTGGATTGATTTGGGCTCTCTATTTTATTTACACTGGCGATCTTGAAGAA
GATGAAGAGTCTGGCTTGTCCCTTTGAATTAAGGGTTATTTAAACTTAGG
CTTGTTGAATTTATTAATGCCCTCTTGTTAAAGAACTGGAAAACCTTTAA
ATCAACCAAAGAAAAGCTTTTGGCTCTTGAAANAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAG
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