EY659764

Overview
NameEY659764
Unique NameEY659764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5804 contig Csv1_Contig5804:47..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659764 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.435e-25
Identity = 80/267 (29.96%), Postives = 125/267 (46.82%), Query Frame = 3 
Query:   27 RDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSE---SAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICA---PVSPGNSRVIWAFPRNF-------QIWIDKVVPRWIFHIGQNLIPDSDLCLLHVEERKIMAVGPAN--------WQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLP---PTLPREQLMDRYWSHVVNCKSCNAAHKSLNALE 755
            RD+ YGY+ LMEN+ DP+H+ +AH+        KV   R+  +P+    E     GF    D     +AKF+APC  +   +L             A+  +   +  +I+IC+   P++PG +R I    RNF         W  +VVPRW  H   NL+ D D+ +L  +E+  +A    +        + K  F PT++D  V+ FR WL+++   Q  W G   +  P     L + Q++DR+  H   C SC  A+ S   L+
Sbjct:  234 RDLFYGYDTLMENVSDPSHIDFAHH--------KVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIEL------------DAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWW-QVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILK 479
The following BLAST results are available for this feature:
BLAST of EY659764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH5.435e-2529.96Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659764 ID=EY659764; Name=EY659764; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGAAAATGTTTGGCAGCAGGGATGTTCCTTATGGATATGAG
GTCCTAATGGAAAATCTTATGGATCCTGCTCATCTTACATATGCACATTA
CGGAATGATGCGTACGAGGAAACCCAAAGTGATGCTCGATAGAGAAGGGG
GAAGACCAATCAAAATAAGTTTCGAGAAAATAGACATAAATGGTTTCATT
GCAAAGCAGGATTCGGAAAGTGCCAAATTTTTGGCACCTTGTGTCTTTGT
TGTTTATTTTGATCTTCTGGAGAATCAGGAAAATGGATCTGCATCATCGG
GAGGAGCCGAAGAGAAGCTGAAGCAACGAAGAGTAGCTATGATTTTTATT
TGTGCTCCAGTAAGTCCGGGTAACAGCAGAGTAATCTGGGCCTTCCCAAG
AAACTTCCAGATTTGGATAGACAAAGTTGTTCCGCGGTGGATATTTCATA
TTGGACAGAACCTAATTCCGGATTCAGATTTATGCCTGCTTCACGTTGAG
GAGCGAAAGATAATGGCTGTTGGCCCTGCTAATTGGCAGAAAGCTTGTTT
TGTGCCAACAAAATCCGATAACCTGGTAGTTGGTTTCAGGATGTGGTTAA
AAAAATATTCCGGTGGCCAATTCAATTGGGGAGGAAAATTCGATGCAACT
CTTCCACCAACACTGCCAAGAGAACAGCTCATGGACAGGTACTGGTCTCA
TGTGGTGAACTGCAAAAGTTGCAATGCTGCACACAAGAGTCTCAATGCAC
TTGAGGTCATACTGCAAGTCGTCTCTGTTGTTTCAGTTGGGATTGTTGCT
GCAACCAAGCAGAACGCCATGTCCATGGGCTACAGAGCTACGATCGTGTC
ATTTGCAGTAATCTGCTTTGCAGCTTCAAATGGGGCATATAGTCATTCCA
CATAAAGGAGA
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