EY659739

Overview
NameEY659739
Unique NameEY659739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4748 contig Csv1_Contig4748:407..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659739 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.607e-56
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 1
Query:   31 ERPRIRHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSF 519
            ERPRIRHQHSQSMDGS +I  EMLMS +++                    IDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LN+ALKEEIQHLKVLTGQ  P+    +NY SF
Sbjct:  151 ERPRIRHQHSQSMDGSMNIN-EMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSA---LNYGSF 309          
BLAST of EY659739 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.913e-51
Identity = 111/166 (66.87%), Postives = 120/166 (72.29%), Query Frame = 1
Query:   22 ASTERPRIRHQHSQSMDGSTSIKPEMLMSAS---DEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNY 510
            A+    R +HQHS SMD S SIK E L+ AS   +                     +DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEAT+LSAQL LLQRDT+GLT ENSELKLRLQTMEQQVHLQDALND LK E+Q LKV TGQ    GG MMN+
Sbjct:  124 AAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNF 289          
BLAST of EY659739 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.596e-40
Identity = 89/147 (60.54%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   37 PRIRHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 477
            PR +H+HS S+DGS         +A+                      IDPKRAKRI ANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTL QRDT GL+AEN+ELK+RLQ MEQQ  L+DALNDALK+E++ LK+ TG+
Sbjct:   83 PRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGE 229          
The following BLAST results are available for this feature:
BLAST of EY659739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POF21_ARATH1.607e-5673.01Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2A_ORYSJ5.913e-5166.87Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
RF2B_ORYSJ3.596e-4060.54Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659739 ID=EY659739; Name=EY659739; organism=Citrus sinensis; type=EST; length=521bp
CCACGCGTCCGGTGGGTGTTGGCATCTACTGAGAGGCCTAGGATTAGACA
TCAGCACAGCCAGTCAATGGATGGTTCGACGAGTATTAAGCCAGAAATGC
TCATGTCAGCTTCAGATGAGGCGCCTTCTGCTGATTCGAAGAAAGCTATG
TCTGCTGCTAAGCTTGCTGAACTAGCACTCATTGATCCAAAGCGTGCAAA
GAGAATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGA
TGCGATACATAGCTGAGCTTGAACGTAAAGTACAGACATTACAAACTGAA
GCAACCTCATTGTCTGCTCAATTGACATTATTGCAGAGAGATACTAATGG
TCTGACTGCTGAAAATAGTGAATTGAAACTGCGTTTGCAAACGATGGAGC
AACAAGTCCACTTGCAAGATGCACTAAATGATGCACTGAAGGAGGAGATT
CAGCATCTGAAGGTATTGACTGGCCAAGCAATGCCTAATGGTGGACCAAT
GATGAACTATCCGTCTTTTGG
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