EY659730

Overview
NameEY659730
Unique NameEY659730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.432e-21
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 2
Query:  242 RTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGRPA 403
            RTLDPHIE QFGSGRL+AC+SS PG  GRADGYILE KELEFYMKK+Q KKG+ A
Sbjct:  165 RTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA 219          

HSP 2 Score: 33.8834 bits (76), Expect = 3.432e-21
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  159 G*EGEAPATNEAKKSNHVLRKLEKRKK 239
            G E EA A  E KKSNHV RKLEKRK+
Sbjct:  138 GQEVEA-AAEETKKSNHVTRKLEKRKE 163          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.664e-20
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 2
Query:  242 RTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGRPA 403
            RTLD HIE QFGSGRL+AC+SS PG  GRADGYILE KELEFYMKK+Q KKG+ A
Sbjct:  164 RTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 218          

HSP 2 Score: 35.039 bits (79), Expect = 1.664e-20
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  159 G*EGEAPATNEAKKSNHVLRKLEKRKK 239
            G + EA  T EAKKSNHV+RKLEKR++
Sbjct:  137 GQDAEA-TTEEAKKSNHVVRKLEKRQQ 162          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.310e-19
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  242 RTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGRPAG 406
            R LD H+E QF SGRL+AC++S PG  GRADGYILE KELEFYMKK+Q KKG+ AG
Sbjct:  153 RALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAG 208          

HSP 2 Score: 35.039 bits (79), Expect = 2.310e-19
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:  165 EGEAPATNEAKKSNHVLRKLEKRKK 239
            +GEA  T E KKSNHV RKLE R++
Sbjct:  127 KGEAVTTEEVKKSNHVQRKLEMRQE 151          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.451e-18
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  242 RTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGRPAG 406
            RTLD HIE QFG G+L+AC+SS PG  G+ADG ILE KELEFYMKK+Q KKG+ AG
Sbjct:  163 RTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAG 218          

HSP 2 Score: 33.8834 bits (76), Expect = 1.451e-18
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  165 EGEAPATNEAKKSNHVLRKLEKRKK 239
            EGEA  T EAKKSNHV  KLEKR++
Sbjct:  138 EGEA-TTEEAKKSNHVAIKLEKRQQ 161          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  194 KEEQPCLEKA*EA*KDRTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGRPA 403
            K+    L K     + R+LD HIE QF SGRL+AC+SS PG  GRADGYILE KELEFYMKKIQ KKG+ A
Sbjct:  151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  194 KEEQPCLEKA*EA*KDRTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGR 397
            K  +   +K  E  K   + P +E QF  G+L+AC++S PG  GRADGY+LE KELEFY++KI+ KKG+
Sbjct:  140 KRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  236 KDRTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGR 397
            K+  + P ++ QF  G+L+AC+SS PG  GRADGY+LE KELEFY++KI+ KKG+
Sbjct:  154 KNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of EY659730 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  236 KDRTLDPHIEVQFGSGRLIACVSSPPGHRGRADGYILE-KELEFYMKKIQGKKGR 397
            K   + P +E QF  G+L+AC+SS PG  GRADGY+LE KELEFY++KI+ KKG+
Sbjct:  154 KTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
The following BLAST results are available for this feature:
BLAST of EY659730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RS8_MAIZE3.432e-2180.0040S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ1.664e-2078.1840S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS82_ARATH2.310e-1971.4340S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS8_PRUAR1.451e-1871.4340S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS81_ARATH1.150e-1563.3840S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_XENLA3.828e-1149.2840S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_ICTPU3.828e-1156.3640S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_DANRE5.000e-1158.1840S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659730 ID=EY659730; Name=EY659730; organism=Citrus sinensis; type=EST; length=611bp
CCACGCGTCCGGCAAAAAGTACAGTCATTAAGTTTTCAAAGAGGGGAAAA
TAAGAGCAGCACCAAACGATGTTATCAATTTCCTCGTTCAATTTTGCAGA
TTCACAAATTGATTGCAAGATTACTACTTAAATATTTAACTTGTCTCGTT
TCACTGGAGGATAGGAAGGTGAGGCTCCTGCCACTAATGAGGCAAAGAAG
AGCAACCATGTCTTGAGAAAGCTTGAGAAGCGTAAAAAGATCGCACGCTT
GACCCACATATTGAGGTGCAGTTTGGTAGTGGTCGTTTGATAGCTTGTGT
CTCATCTCCGCCTGGCCACCGTGGACGTGCTGATGGATACATCTTGGAGA
AAGAGCTGGAATTCTACATGAAGAAGATACAGGGGAAGAAGGGCAGGCCG
GCGGGGGTGCTGGTGCTGCATAAATTTTTGTTTATTGAAACTCCATACTG
GAATTTCTAGTTTTGCCTTGTGTTCTTATTTTTAGTCTTAATTAAGTTAA
GAGAGTTGAGATGATATGAGCAGTTGAACATGGATTCCCCACTTGTGTTA
TTGCTACGTTTCGTTTTTGAATGTTACCAGTGCCTATCTTAGAATTAAAA
AAAAAAAAAAA
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