EY659724

Overview
NameEY659724
Unique NameEY659724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659724 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.836e-20
Identity = 47/53 (88.68%), Postives = 53/53 (100.00%), Query Frame = 3 
Query:  459 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 617
            +VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:  211 KVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263
[Close]
BLAST of EY659724 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.332e-18
Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 3 
Query:  459 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 617
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of EY659724 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.332e-18
Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 3 
Query:  459 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 617
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of EY659724 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.080e-17
Identity = 42/53 (79.25%), Postives = 52/53 (98.11%), Query Frame = 3 
Query:  459 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 617
            +VA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:  167 KVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219
[Close]
BLAST of EY659724 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:  459 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 617
            +VA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:  215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267
The following BLAST results are available for this feature:
BLAST of EY659724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RRFC_SPIOL8.836e-2088.68Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ORYSJ6.332e-1881.13Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI6.332e-1881.13Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_DAUCA1.080e-1779.25Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ARATH2.406e-1781.13Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659724 ID=EY659724; Name=EY659724; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGGCAGGAACTGCCAAAGGTTGTGGCCAAACAGGCTGAAGA
AGGGAAGGTAGTTATGCTTCTTTTATTCACGATTTCATAGGTTTCTTCTC
CTCTTTGTAATCTATCTAATACTAAAGTTCAGATTTTCATTATCTTTTCA
GTGCTTATAATTTTCATGAAGGTAGATATCACAGGAAATCTGTACAAGAC
GGTGTTTTCTAAATTAAAGAAGTTTTTGGTCTAAAATTTATAGTTTGCTT
TGACGAATGTAAAGGTATTGGCATGAAATACTTTAAATTACTTTGAGAGG
AGTTTCATTGTGGTTTATCAGGGTACTAAGTCATAACCTGAGTACATGGA
TTTTAAAGTTGCATGTGTTGGTTAATTTTTATACACAAATCTCTGTGTTT
ACTGATATAAATTCCCCGGTTTTGTCATCTTTGCTGCACTGCCCCCATCA
ATCATTTGCAGGTGGCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCT
TATGAAAAACTTCAGAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGA
CTTGTCAAGTGATTTACAGAAACTAACAGATGAGTATATGAAGAAGATTG
ATAGCATCTACAAACAGAAAGAGAAGGAGTTGTTGAAGGTTTAATGATTG
TTTACACACAAATGTAATGGTGAGCTCTCTAGTGAATCTCAGAATGCACT
CTTTATTTTTTGGTTTGCCCATAGAATGGCATTTTTTGATACTAATGGGA
GACACGGGTGGATATTTTGTTATGAAATGAAATGTGGGAATTAGTTATTC
TAGACTCCTTTGTAAAATCGTTTGTATAGCAACCTTGTGACTTATTTACT
GGGAACACTGAAGAGTGACCACGGTACGAGTATGACATTATTAATTGTAT
TGT
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