EY659680

Overview
NameEY659680
Unique NameEY659680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659680_ssr724 microsatellite EY659680_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:113..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 327.405 bits (838), Expect = 6.633e-89
Identity = 175/226 (77.43%), Postives = 193/226 (85.40%), Query Frame = 1
Query:  181 FAVRASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            F V+A+AKDIAFDQ SR+AMQAGIDK++DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDGVLSI              GME  +GYISPQF +   ++     NARVL+T
Sbjct:   43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLIT 268          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.131e-88
Identity = 174/226 (76.99%), Postives = 193/226 (85.40%), Query Frame = 1
Query:  181 FAVRASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            F+VRA+ K+IAFDQ SRAA+QAGIDK++D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+KKARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVLSI              GME  +GYISPQF +   +      NARVL+T
Sbjct:   42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLAEFENARVLIT 267          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 9.578e-88
Identity = 174/226 (76.99%), Postives = 191/226 (84.51%), Query Frame = 1
Query:  181 FAVRASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            F+VRA+ K+I+FDQ SRAA+QAGIDK++DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEK+ARP++G  DIKAVATISAGND+L+GTMIADAIDKVGPDGVLSI              GME  +GYISPQF +   +      NARVL+T
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLIT 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 5.256e-86
Identity = 167/222 (75.23%), Postives = 191/222 (86.04%), Query Frame = 1
Query:  193 ASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFSQTL-RNYC*I*NARVLVT 855
            A AK+IAFDQ+SRAA+QAG++K+++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE+KARP++G  DIKAVA+ISAGND+LIG MIADAIDKVGPDGVLSI              GME  +GYISPQF   L ++     NARVL+T
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLIT 223          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.997e-85
Identity = 171/226 (75.66%), Postives = 188/226 (83.19%), Query Frame = 1
Query:  181 FAVRASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            F++RA+ K+IAFDQ SRAA+QAGIDK++DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEK++RP++G  DIKAVATISAGND+LIG MIADAIDKVGPDGV  I              GME  +GYISPQF +   +      NARVL+T
Sbjct:   41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLIT 266          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.608e-85
Identity = 168/210 (80.00%), Postives = 182/210 (86.67%), Query Frame = 1
Query:  229 RAAMQAGIDKVSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            R A+Q+GIDK++DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEKKARP++GRDDIKAVA+ISAGND+LIGTMIADAIDKVGPDGVLSI              GME  +GYISPQF +   +  C   NARVLVT
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLICEFENARVLVT 210          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.422e-69
Identity = 141/223 (63.23%), Postives = 173/223 (77.58%), Query Frame = 1
Query:  193 ASAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            A AK+I FDQ SR  +QAGI+KV+DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV +L++ A+P++GRDDIK VA+ISAGND+ IG MIADA+DKVG +GVLSI              GME  +GYISPQF +   R      N RVLVT
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSNSTETVVEVQEGMEIDRGYISPQFVTNQERLLVEYDNCRVLVT 256          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.904e-60
Identity = 121/223 (54.26%), Postives = 166/223 (74.44%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVTIK 861
            AK + FD+ SR A++ G++ ++DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV+E+E K++P+ G D I  VATISAGND  +G MIA A+DKVG DGV+++              GM+  +GYISP F +   R    I NAR+L+  K
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVTDAERMVAEIENARLLIVNK 223          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.033e-57
Identity = 116/227 (51.10%), Postives = 166/227 (73.13%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVTIKNFCN 873
            AK I F + +R A++ GI++++DAV +T+GP+GRNV+L++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVA+KTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LVE++  +A+P+EGR +I  VATISAGND  +G MIA A+D VG DGV+++              GM+  +GYISP F + T R      NA +L+T     N
Sbjct:    2 AKQILFREEARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEESKSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLITSNKLSN 228          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.349e-57
Identity = 113/202 (55.94%), Postives = 154/202 (76.24%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            AK I FD+ +R A++ G++ ++DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV  LV+E+   A+P+E    I  VATIS+GND+ IG MIA+A+DKVG +GV+++              GM+  +GY+SP F
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYF 203          
The following BLAST results are available for this feature:
BLAST of EY659680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA6.633e-8977.43RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH1.131e-8876.99RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA9.578e-8876.99RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT5.256e-8675.23RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.997e-8575.66RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO2.608e-8580.00RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE3.422e-6963.23RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM12.904e-6054.2660 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH601_SYNJA1.033e-5751.1060 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_GLOVI1.349e-5755.9460 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659680 ID=EY659680; Name=EY659680; organism=Citrus sinensis; type=EST; length=883bp
ACTTGTTGGTACCTTATCCGAAACATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGGTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAAGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAAGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAAACTACTGNT
GAAAGTGAGGAAGGAATGGAGATNNGACAGGGGTACATCTCTCCTCAGTT
TTCACAAACCCTGAGAAATTATTGTTGAATTTGAAATGCTAGAGTGCTGG
TCACGATCAAAAATTTCTGCAATAAGGAATATT
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