EY659678

Overview
NameEY659678
Unique NameEY659678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659678_ssr85 microsatellite EY659678_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7681 contig Csv1_Contig7681:21..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659678 vs. ExPASy Swiss-Prot
Match: CTR9_MOUSE (RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.671e-27
Identity = 59/146 (40.41%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  353 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYXNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLGSLNT 790
            +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY NCLRKFY + + +++LYLAR  ++  + Q+CK++LL+A H+   +T
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDT 751          
BLAST of EY659678 vs. ExPASy Swiss-Prot
Match: CTR9_HUMAN (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.671e-27
Identity = 59/146 (40.41%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  353 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYXNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLGSLNT 790
            +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY NCLRKFY + + +++LYLAR  ++  + Q+CK++LL+A H+   +T
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDT 751          
BLAST of EY659678 vs. ExPASy Swiss-Prot
Match: CTR9_XENTR (RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.620e-26
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  353 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYXNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLGSLNT 790
            +   L    R  + E  H ++A  +Y +V+   + NLYAANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY NCLRKFY + + ++LLYLAR  ++  + Q+CK+ LL+A H+   +T
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPNDT 751          
BLAST of EY659678 vs. ExPASy Swiss-Prot
Match: CTR9_XENLA (RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.635e-25
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  353 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYXNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLGSLNT 790
            +   L    R  + E  H ++A  +Y +V+   + NL+AANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY NCLRKFY + + ++LLYLAR  ++  + Q+CK+ LL+A H+   +T
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPNDT 751          
BLAST of EY659678 vs. ExPASy Swiss-Prot
Match: YKD1_CAEEL (TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.141e-17
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  353 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYXNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 757
            +F  L N  R  + E  ++++A ++Y + +     N+YAANG G VLA K  ++ ++D+F+QV+E+ S     +  DVW+N+AHV   +  +  A++MY + ++KF    D+ +  YLA+ +Y A    + K++L
Sbjct:  642 WFEQLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRANMLNEAKEAL 771          
The following BLAST results are available for this feature:
BLAST of EY659678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CTR9_MOUSE8.671e-2740.41RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_HUMAN8.671e-2740.41RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENTR5.620e-2640.41RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENLA1.635e-2539.73RNA polymerase-associated protein CTR9 homolog OS=... [more]
YKD1_CAEEL2.141e-1732.59TPR repeat-containing protein B0464.2 OS=Caenorhab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659678 ID=EY659678; Name=EY659678; organism=Citrus sinensis; type=EST; length=837bp
GAGCTTAAAAATGATGACTGGGTCAAGGCAAAAGAACATTCCGAGCTGCC
AGTGATGCAACTGATGGGAAGGATTCTTATGCTACTCTCTCTCTGGTGCA
TATATTTTTCGTCTTTGGAATTCTTCCAACTTTTCTTTACACATCTTGGT
ATTATATTTATAAGCTCACACTCTTATTGCCCTGTCAGTCCCTCGAGATG
CTTTTGCTGGGTTTAGTCCTTTTTTTCTCGTCTACCTGCACAACTCATTA
CCATAATAAAAGATTTATTTCATTACTGTTGTTATAATCATTACACTGCA
GCTTAATATCCATCTCATATGCTTGGTTGGTTTTGGTAAGGGAAACTGGA
ACTACTTCGCCGCCCTTCGTAACGAAAAGAGAGCCCCAAAGTTGGAAGCA
ACCCATTTGGAAAAAGCGAAGGAACTCTACACGAGAGTTATTGTCCAGCA
TACATCTAATCTCTATGCTGCCAATGGTGCTGGAGTGGTCTTGGCAGAAA
AAGGCCAGTTTGATGTTTCAAAAGATCTTTTTACGCAGGTTCAAGAAGCT
GCAAGTGGAAGTGTCTTTGTCCAGATGCCAGATGTGTGGATAAATTTGGC
GCATGTTTATTTTGCTCAAGGAAATTTTGCTTTGGCTATGAAAATGTATC
ANAATTGCTTGAGGAAATTTTATTATAATACGGACGCCCAAATTCTTCTC
TATTTGGCCCGAACTCATTATGAAGCTGAACAGTGGCAAGACTGCAAGAA
ATCATTGCTGAGAGCGATCCACTTGGGCTCCCTCAATACACATTAANNAT
TGATGCAAGTGTTGCTATGCANAAGTTTTCGGCNTCA
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