EY659648

Overview
NameEY659648
Unique NameEY659648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.688e-24
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  433 TSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGISSTDPRSKSIP 705
            T   ++ P S++N + E+  FECNIC D A+D +V+LCGHLFCWPCL +WL    N + CPVCK+ I+  K+VP+YGRG  S+DPR K  P
Sbjct:    5 TKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPP 94          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.702e-24
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  415 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:    2 ASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 108          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.702e-24
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  415 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:    2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 108          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  415 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:    2 ASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 108          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  415 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:    2 ASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 108          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  415 SSFGESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            SS    TS S+ +  + +N+N +   FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:   14 SSSTGGTSGSSSSNGAGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 110          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  412 ASSFGESTSRSAQNPYSNNNSNSEAGN-------FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-ISSTDPRSKSIP 705
            A+S   S+S S+    +N  S  E+G        FECNIC D ++D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG     DPR K+ P
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPP 110          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  463 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGISS-TDPRSKSIP 705
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG     DPR K+ P
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPP 96          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  463 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGISS-TDPRSKSIP 705
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG     DPR K+ P
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPP 96          
BLAST of EY659648 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.004e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  454 PYSNNNSNSEAG-NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGISS-TDPRSKSIP 705
            P   N     AG  FECNIC + A++ +V++CGHL+CWPCL++WL      +ECPVCKA I  EK+VPLYGRG     DPR K+ P
Sbjct:   11 PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPP 96          
The following BLAST results are available for this feature:
BLAST of EY659648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL5.688e-2452.75RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_RAT9.702e-2448.60RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE9.702e-2448.60RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_PONAB2.161e-2348.60RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_HUMAN2.161e-2348.60RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK3.687e-2350.00RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RN185_DANRE6.289e-2347.17RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RNF5_RAT7.688e-2151.22E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE7.688e-2151.22E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN1.004e-2052.33E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659648 ID=EY659648; Name=EY659648; organism=Citrus sinensis; type=EST; length=881bp
ATTACTTATTTCCTGTTTTATTTTAAGCCAAGTCATATGGGTATGTCAGA
TTGTGATTTCTTGAAAGATCTGGAATATTGGTGGTTGAATTTGTTCCGTT
TGTCTTTTTAATTAAATTATGCGCTATATTGTCATCAGAAAATACGGTAG
AAAATTGAATAAATTTCCTTTCAAAGATCCTGAGAGTTTTGATTTGTAGT
GAGGTTTTGATAAATTTTTGTGAATCACTGTAATAGCCTAAGGATATTCT
GATCTTAAATTTGTTGCTTCGTTTAAATGGATGGTGTTGATTTTGTGTTC
TTTGTTTTACATAATTTATTTTTCAGATTAAGATACCAAAAATCTTTCAT
TTCGTGTTAATCTATTGTAATCTGATCAAATAGGCATTTGGGTTTTTGTA
ATCTAGAGATGGCAAGTAGTTTTGGGGAATCAACAAGCAGGTCGGCCCAA
AACCCTTATTCTAACAACAATAGTAATAGTGAAGCTGGTAACTTCGAATG
CAATATTTGCTTTGACTTAGCTCAAGATCCTATTGTAACTTTGTGCGGTC
ATCTTTTCTGCTGGCCCTGCCTTTACAAATGGCTCCACGGTCACTCAAAT
TATCGGGAGTGCCCAGTGTGTAAGGCCACAATTGAGGAGGAGAAGCTCGT
GCCCTTGTATGGCAGGGGAATATCATCAACTGACCCCAGATCAAAATCCA
TCCCTGGTGTTAATATTCCGAATCGTCCTACAGGGGCAGAGCCTGAAACT
GCTCCTCCGCCAGAGCCAAGTCATTTTCAGCATCAACATGGATTTGGCTT
ATGGGAGGCTTAAGTGGGTTTGCTCCAATGGCCGCAACAGAATTGGGAAT
TCACTTATCTGCAGCTTTTGTGGCGCCATCC
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