EY659613

Overview
NameEY659613
Unique NameEY659613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659613 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  104 LGNMNQRAYPTPNMRVDKLDTVDISAFCDRGANACCLIALNNLMGETICFICQQSLTSTITG*TEPMHMCLEWIDECEPFNILEYD 361
            +G     A P P  R+DKLDTV    FC+ G++  C I + NL+GE  C ICQ++ ++T+   TEP+ +  EWIDECE  N +E D
Sbjct:    1 MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86
[Close]
BLAST of EY659613 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 2 
Query:  104 LGNMNQRAYPTPNMRVDKLDTVDISAFCDRGANACCLIALNNLMGETICFICQQSLTSTITG*TEPMHMCLEWIDECEPFNILEYD 361
            +G    RA P P  R+DKLDT+    FC+ G++  C+I + +L+G+  C IC++S ++TIT  TE + +  EWIDECE  N  E D
Sbjct:    1 MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDD 86
The following BLAST results are available for this feature:
BLAST of EY659613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ELOF1_ORYSJ5.295e-1544.19Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH5.295e-1543.02Transcription elongation factor 1 homolog OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659613 ID=EY659613; Name=EY659613; organism=Citrus sinensis; type=EST; length=939bp
ATGCTTTTTTTTTGCTGTGAGTTATTGGGTCCTCCTCTTATCTGTGACAG
AGTAGGGTACCAAGCCGTCCGTATCTGCATTTGTTACTCGCACGACTTGA
GCTCTGGGAAATATGAATCAAAGGGCATATCCGACACCCAATATGCGAGT
GGACAAACTCGACACTGTCGACATCAGTGCCTTCTGTGACCGTGGCGCCA
ATGCCTGCTGCCTCATTGCTCTGAACAACTTGATGGGCGAAACTATATGC
TTTATATGCCAACAGAGCCTCACCTCTACTATCACAGGTTGAACTGAACC
AATGCACATGTGTCTTGAATGGATTGATGAATGTGAACCGTTTAACATCC
TTGAGTATGACTGAGCTTATGATAGATCTCGATGTCTACTGTACTGACGA
CGGTGTGAGAATCTCTGTGATGAGATAGCTTGATGTCATCTGTACCCACA
TNGATGTATGAATCTCTATCGGCTGTCCTTATATCTGTTCACCCAGGAGT
GCTCATGTCCATGCTGATACTCTCTCAAGTGCTGTTGCTAACTGATGTAG
TGCAGTTCGATGCTATTAATGCACTTGTAATAATCATAGGGTGTTGTAAG
ATAAACAAAATACAAAACATAGGCACGGCGCTCTAACAGATCCATTGCTA
CGGACTGCCTGATGCGAGACACTAGATCTTTGATCGCTGCACCTGAATTC
ATTTCACTGGGCGACGGCGTACACTCTACTAGACTGGGAAACTCCTGGCT
TGGCCAACCTTATTTGGCTGCCATTCATGGCCCTATTTCACGCTGGGGGA
ATTGAAGGAGTCGCGGTCAATATGCCTTCCCTTGGCGCGCTCTCTGATGG
TCATATGGAGCACCGCTGAATGGCCTTAACGCGGCGGGGTGGTGGTATCG
TAGCAGTTCGCTTCTCTTGCAAGGACATTGGCGTGTATT
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