EY659603

Overview
NameEY659603
Unique NameEY659603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7490 contig Csv1_Contig7490:1..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659603 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.758e-56
Identity = 101/145 (69.66%), Postives = 120/145 (82.76%), Query Frame = 1
Query:  109 ISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELA 543
            ++LYR+A+ LGD  GQ NLGI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAEGGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V+YLELA
Sbjct:  162 VNLYRRASELGDAVGQCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSVLYLELA 306          

HSP 2 Score: 29.6462 bits (65), Expect = 9.758e-56
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 3
Query:  546 RAGETAADHVKKCILQQLSAT----SRDRAMLVVDSWRAMP 656
            R GE AA  VK+ + QQLSAT    +   A+   ++WR +P
Sbjct:  308 RGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348          
BLAST of EY659603 vs. ExPASy Swiss-Prot
Match: SE1L1_MESAU (Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 44/145 (30.34%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  118 YRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVV-YLELA 543
            +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      + +G+   AVV YL LA
Sbjct:  438 FKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVVQYLLLA 582          
BLAST of EY659603 vs. ExPASy Swiss-Prot
Match: SE1L1_HUMAN (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 43/145 (29.66%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  118 YRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVV-YLELA 543
            +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      + +G+   AV+ YL LA
Sbjct:  438 FKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLLLA 582          
The following BLAST results are available for this feature:
BLAST of EY659603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB84_ARATH9.758e-5669.66F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
SE1L1_MESAU5.865e-1130.34Protein sel-1 homolog 1 OS=Mesocricetus auratus GN... [more]
SE1L1_HUMAN7.660e-1129.66Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659603 ID=EY659603; Name=EY659603; organism=Citrus sinensis; type=EST; length=914bp
GCTTTATGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATC
CATTCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCT
TTTGGGTTATTAGCTTGTATCGGCAAGCCGCTGTGCTTGGAGATCCAGCT
GGTCAGTTCAATTTGGGAATTTCTTATTTGCAAGCGCAACCTGCAAATGC
AGAGGAAGCTGTGAAGTTGTTGTATCAAGCATCGATTGCTGGCCATGTTC
GAGCTCAGTATCAACTTGCACTTTGCCTGCATAGAGGTCGAGGAGTGGAT
TTCAATCTTCAAGAGGCTGCTAGGTGGTATTTAAGAGCTGCTGAAGGTGG
CTATGTGCGTGCTATGTACAACACCTCTCTTTGCTATTCCTTTGGGGAAG
GCTTGCCACTGAGTCACAGACAAGCGAGGAAATGGATGAAAAGAGCAGCT
GATTGTGGTCACGGCAAAGCTCAACTTGAGCATGGGCTCGGTCTATTTAC
GGAAGGAGAGATGATGAAAGCTGTGGTTTACCTAGAACTTGCACACGTGC
TGGTGAAACAGCAGCAGATCATGTCAAGAAATGTATTCTCCAACAACTGT
CAGCTACTTCACGTGATCGTGCCATGTTAGTCGTCGACAGTTGGCGTGCT
ATGCCCTTCCTTCACTGAGTCTGACCTGATGATGGATTACANGCTTTATA
GCTATTATACTAAATTCCTTTACGGCTTTTTTTTTCTTCCATTAGGTTTC
CTCCGTAGTACATACTATGTGCCCTTTTATCTTTTCCCTTCCCCTTTTGA
TCCTGTGTTTGAAAAAATATAAATTTATACCTGCCTCTGAAAAGCATTTA
CCTTTTAAGCTTCGAAGAACTTGGGGTGGTCCGCAATAGTGGGGGGAAAA
TCCTAATTTGGTTT
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