EY659602

Overview
NameEY659602
Unique NameEY659602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.326e-87
Identity = 165/177 (93.22%), Postives = 172/177 (97.18%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 571
            KFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDR RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA
Sbjct:  232 KFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 74/132 (56.06%), Postives = 106/132 (80.30%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 433
            KF+EVDE+++RLVLS+R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D  RGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++ Q
Sbjct:  167 KFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 73/137 (53.28%), Postives = 105/137 (76.64%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 445
            KF+EVDEE++RLVLS+R+A+ + +   L +  VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D  RGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ R+A+A+ +
Sbjct:  166 KFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 2
Query:   44 FVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 427
            F+EV+    +LVLS R+A   +   ++ +G ++ G V  LKP+G F+D+GG   LL ++QIS   VAD+  + + GD ++ ++++ D  +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct:  164 FLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 2
Query:   47 VEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGD 358
            +E+D   +RL+LS RKA+A  +         ++L +G VV GTV  L  +GAF+D+GG++GL+HVS+ISHDRV + A VL  GD + V IL+ D  +GR+SLS K  +  P D
Sbjct:  196 IEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307          

HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K + +D E+ R+ LS     R    ++  Q+  GSV+ GTV+ +K +GAF++I  GI GL+HVSQIS+ R+ + + VL+ GD ++V +L       R+SLS K LE  P
Sbjct:  283 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   47 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMI 364
            VE+D +++R++LS+R  +   QA         L +GSV+ G VQ L  +GAF+DIGGI+GL+H+SQ+SH  V   + V++ G  +KV +LS DR   R+SLS K   P P + I
Sbjct:  153 VELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTP 352
            K + VD +  R+ LS +  +     Q+G     G V+ GTVQ L  +GAF++I  G+ GL+H+SQIS+  +     VL+ G T+KV +L  +    R+SLS ++LE TP
Sbjct:  240 KVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMI 364
            K VE+D E++R++LS++  +    DS+ +  I     G VV GTVQ L  +GAF+++GG++GL+H+SQISH+RV   + VL+ G  +KV +LS D    R+SLS K  +P P + I
Sbjct:  152 KIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   47 VEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 403
            +E +++ ++LVL+ R+   A+S  ++  G++  G V  ++PYG F++I G+ GLLHVSQ+S  RV  + T+   G  + V +   D  + R+SLST+ LE  PG+++       EK +EM
Sbjct:  166 LEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 38/102 (37.25%), Postives = 69/102 (67.65%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLE 343
            K + V+E+ + L+LS+R+A+ A + + L +G+++ G +  + PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+ +GR+SLS K L+
Sbjct:  162 KLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263          
BLAST of EY659602 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   41 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR*RGRVSLSTKKLEPTPGDMIR 367
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR   R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
The following BLAST results are available for this feature:
BLAST of EY659602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RR1_SPIOL3.326e-8793.2230S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1_SYNP66.361e-3856.0630S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RS1A_SYNY35.573e-3453.2830S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNE71.473e-1835.6630S ribosomal protein S1 OS=Synechococcus elongatu... [more]
RS1_LEULA1.473e-1846.0240S ribosomal protein S1 OS=Leuconostoc lactis GN=... [more]
RS1H_BACSU7.312e-1842.9830S ribosomal protein S1 homolog OS=Bacillus subti... [more]
RS1H_BACC17.312e-1843.1030S ribosomal protein S1 homolog OS=Bacillus cereu... [more]
RS1B_SYNY31.525e-1535.8330S ribosomal protein S1 homolog B OS=Synechocysti... [more]
RR1_PORPU1.686e-1437.2530S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_STAAW2.202e-1441.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659602 ID=EY659602; Name=EY659602; organism=Citrus sinensis; type=EST; length=709bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAGTTTGTGG
AGGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATG
GCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGT
ACAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATG
GTCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCT
ACAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGA
CCGATAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCC
CTGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAG
ATGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCG
TGCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGG
ATGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGAT
TTGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATT
GTATCTTTTGCAACCCAAGACATATTATTAATTCTGTAAAATTTACTGCG
ATTGAAACTTNCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGGTT
NAAAAAAAA
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