EY659601

Overview
NameEY659601
Unique NameEY659601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.313e-88
Identity = 166/177 (93.79%), Postives = 173/177 (97.74%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 570
            KFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA
Sbjct:  232 KFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 160.999 bits (406), Expect = 6.335e-39
Identity = 75/132 (56.82%), Postives = 107/132 (81.06%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 432
            KF+EVDE+++RLVLS+R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++ Q
Sbjct:  167 KFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 74/137 (54.01%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 444
            KF+EVDEE++RLVLS+R+A+ + +   L +  VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ R+A+A+ +
Sbjct:  166 KFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   46 VEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 357
            +E+D   +RL+LS RKA+A  +         ++L +G VV GTV  L  +GAF+D+GG++GL+HVS+ISHDRV + A VL  GD + V IL+ D E+GR+SLS K  +  P D
Sbjct:  196 IEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307          

HSP 2 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K + +D E+ R+ LS     R    ++  Q+  GSV+ GTV+ +K +GAF++I  GI GL+HVSQIS+ R+ + + VL+ GD ++V +L       R+SLS K LE  P
Sbjct:  283 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   43 FVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 426
            F+EV+    +LVLS R+A   +   ++ +G ++ G V  LKP+G F+D+GG   LL ++QIS   VAD+  + + GD ++ ++++ D  +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct:  164 FLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   46 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363
            VE+D +++R++LS+R  +   QA         L +GSV+ G VQ L  +GAF+DIGGI+GL+H+SQ+SH  V   + V++ G  +KV +LS DR+  R+SLS K   P P + I
Sbjct:  153 VELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266          

HSP 2 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            K + VD +  R+ LS +  +     Q+G     G V+ GTVQ L  +GAF++I  G+ GL+H+SQIS+  +     VL+ G T+KV +L  +    R+SLS ++LE TP
Sbjct:  240 KVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363
            K VE+D E++R++LS++  +    DS+ +  I     G VV GTVQ L  +GAF+++GG++GL+H+SQISH+RV   + VL+ G  +KV +LS D +  R+SLS K  +P P + I
Sbjct:  152 KIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   46 VEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 402
            +E +++ ++LVL+ R+   A+S  ++  G++  G V  ++PYG F++I G+ GLLHVSQ+S  RV  + T+   G  + V +   D  + R+SLST+ LE  PG+++       EK +EM
Sbjct:  166 LEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659601 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   40 KFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            K  E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  157 KVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
The following BLAST results are available for this feature:
BLAST of EY659601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RR1_SPIOL3.313e-8893.7930S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1_SYNP66.335e-3956.8230S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RS1A_SYNY35.550e-3554.0130S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_LEULA1.467e-1946.9040S ribosomal protein S1 OS=Leuconostoc lactis GN=... [more]
RS1_SYNE77.282e-1935.6630S ribosomal protein S1 OS=Synechococcus elongatu... [more]
RS1H_BACSU1.622e-1842.9830S ribosomal protein S1 homolog OS=Bacillus subti... [more]
RS1H_BACC11.622e-1843.1030S ribosomal protein S1 homolog OS=Bacillus cereu... [more]
RS1B_SYNY39.842e-1635.8330S ribosomal protein S1 homolog B OS=Synechocysti... [more]
RS1_STAAW4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAS4.884e-1541.5330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659601 ID=EY659601; Name=EY659601; organism=Citrus sinensis; type=EST; length=752bp
ATCAACTGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAATTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTNAATAGCAGTTGTATTG
TATCTTTTGCAACCAAAGACATATTATTAATTTTGTAAAATTTACTGCGA
TTGAAACTTNCAGCCAAATATGCAAGCTCAAATTTTTTCCTCTTGGGTAA
AAAAAAAAAAAAAAAAAAAANAANNNNNNCNAAAAAAAANATTNATAAAA
AA
back to top