EY659568

Overview
NameEY659568
Unique NameEY659568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.944e-21
Identity = 57/164 (34.76%), Postives = 95/164 (57.93%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYA----HEQVCAIVSSESTNMNDLP 491
            MK +FM   DGL T +  +V+V+ ATNRP D+D A++RR+P    V LP+A  RE+I+R+IL+ E L++ ++L+ IA+ ++GYSGSDLK LC  AA   +R+ +  ++  +     +         S  +RP+   D  +      E   A  +++  N+ ++P
Sbjct:  215 MKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQMKQIAQQFQLDEEEEHVDSRQLRPVTQLDLLFGLDKMRESKQATATTDPANLREVP 378          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 6.044e-19
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            MK EF+V  DG  +   +R+LV+ ATNRP++LD+AV+RR P+R+M+NLPD   R+++I   L K ++    S  D+  IA+   G+S SDL  LC  AA  P+REI
Sbjct:  388 MKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREI 493          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.346e-18
Identity = 62/178 (34.83%), Postives = 98/178 (55.06%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-----RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSESTNMNDLPSME*TILRRWIEE 530
            +K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+   +R  +E    +    L+ +             P  M+DF+ A ++V     S+S + +D+   E     +WIEE
Sbjct:  330 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMH---------MPTTMEDFEMALKKV-----SKSVSASDIEKYE-----KWIEE 488          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 93.2041 bits (230), Expect = 2.297e-18
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   12 MKNEFMVNRDGL-RT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI-LENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQ 443
            +K EF+V  DGL    + +R++V+AATNRP +LDEA +RR P+R+ V LPD   RE ++R +L K+    SD DL  +A + +GYSGSDL  L   AA  PIRE+ +E  KN     L   R S    S   +R  +      A+E+
Sbjct:  622 LKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRELNVEEVKNMDPTKLRSIRESDFHNSLKRIRRSVAPQSLAAYEK 768          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL--AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE-----NEKNDRALALAE 362
            +K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I+  +L   + E+ +D +LE I  + DGYSG+D++ LC  AA  PIREI +     N+ + RA+ +A+
Sbjct:  435 IKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEI-TDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGDQIATINKDDIRAVTVAD 557          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.918e-18
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQV 446
            MK +FM   DGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA   +RE +             N  S   +   ++RP+   D   A E++
Sbjct:  212 MKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYV-------------NSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.918e-18
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQV 446
            MK +FM   DGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA   +RE +             N  S   +   ++RP+   D   A E++
Sbjct:  212 MKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYV-------------NSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.918e-18
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQV 446
            MK +FM   DGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA   +RE +             N  S   +   ++RP+   D   A E++
Sbjct:  212 MKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYV-------------NSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.116e-18
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 3
Query:   12 MKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV---DLEGIANMADGYSGSDLKNLCVTAAHCPIREI 320
            MK EF+V  DG  +   +R+LV+ ATNRP +LD+AV+RR P+R+M+NLPD   R+++I   L K  +   +   D+  IA+   G+S SDL  LC  AA  PIREI
Sbjct:  358 MKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREI 463          
BLAST of EY659568 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 3
Query:    6 LFMKNEFMVNRDGLRT*DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPIREILENEKNDRALALAENRASPSLYSSVDVRPLIMDDFKYAHEQVCAIVSSE 467
            L +KNEF+++ DG  + ++ RVLV+ ATNRP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +  +A + DGYSG+D+  LC  A+  P+R +  ++     + + E    P+         + MDDFK A   +   VSSE
Sbjct:  367 LRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQ-----MEVIETHQLPA---------VTMDDFKQALRVISKSVSSE 507          
The following BLAST results are available for this feature:
BLAST of EY659568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ATD1A_DANRE4.944e-2134.76ATPase family AAA domain-containing protein 1-A OS... [more]
SPAST_CAEBR6.044e-1946.23Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KTNA1_XENTR1.346e-1834.83Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
SPAST_ANOGA2.297e-1841.50Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
FIGL1_CAEBR3.000e-1843.55Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
ATAD1_RAT3.918e-1837.93ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE3.918e-1837.93ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN3.918e-1837.93ATPase family AAA domain-containing protein 1 OS=H... [more]
SPAST_CAEEL5.116e-1846.23Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
FIGL1_DROME6.682e-1838.06Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659568 ID=EY659568; Name=EY659568; organism=Citrus sinensis; type=EST; length=938bp
CTATGCTTTTTATGAAGAATGAATTCATGGTTAACCGGGATGGTTTGCGC
ACATAAGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGC
TGATGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCAC
ATTGTCCCATACGGGAAATTTTGGAGAATGAAAAGAACGACAGAGCTTTA
GCATTGGCCGAGAATAGAGCTTCACCTTCATTGTACAGCAGCGTCGACGT
TCGCCCTCTGATTATGGACGATTTCAAATATGCACATGAGCAGGTGTGTG
CAATTGTATCATCAGAGTCTACAAATATGAATGATCTCCCTTCAATGGAA
TGAACTATACTGAGAAGGTGGATCGAAGAAAAAGAAATCTCTGAGCTACT
TTATGCAAAGGGGGATTCTTTTTGAATACCATTCTTGGGTGGGTCATTCC
CCTCTTCATCCTATATGGTGCCAAGATCACGGACCTGTATTTATGGAAAA
TTCTGGAGGGCCGTCCCCTTTTACTTGGAAAAATATACGCTTTTGAACCT
CTTCCCCTTTGGTTAGAAATTCTTTTGTTATATTCTTAACAAGGGTAACT
TAACTCAAATAGGCATTTCCCCTTCCATAAACCGCGACTTTGTTTTTTTG
GCCCTCCAGATGCGTAATAACATTGTGTTAAATCTTGCGAAATATAAGAA
AACAATAATAAACAGGGCCGCCGCTCAGAGGATCAACGTTCCCNACCGGC
TAGCCACGCTTTCTCTTCTTTGTGCCCCCAAATTCATC
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