EY659561

Overview
NameEY659561
Unique NameEY659561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659561 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.571e-19
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  112 QLREGYLSETDSMLHANPNNYTIWPSFLPINLGRFDDGLHRAGDIYLKAQFWIPNAEREKICGLLD*HKLTLQPCTHSVQNERLPIRAEVQGLYFEQSQLPHSIARTLLTADGAPGDTQR 471
            +L +GYL+E    ++     +    + +P      DDGL+RA DIYLK   W+   ERE +C LLD  KL+L+ CTH+ QNERLP+R  VQ L+FEQ QL  S+A   L +D   G +++
Sbjct:  410 KLIDGYLAEVAPDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGGSRQ 529          
BLAST of EY659561 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  112 QLREGYLSETDSMLHANPNNYTIWPSFLPINLGRFDDGLHRAGDIYLKAQFWIPNAEREKICGLLD*HKLTLQPCTHSVQNERLPIRAEVQGLYFEQSQLPHSIART---LLTADGAPG 459
            +L + YLSE     + +   + +    LP +    DDGL+RA D YLKA   +   ER+++C ++D  KL+   C H+ QNERLP+R  VQ L+ EQ ++ +++A +   L ++  APG
Sbjct:  509 RLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPG 627          
BLAST of EY659561 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.753e-13
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  112 QLREGYLSETDSMLHANPNNYTIWPSFLPINLGRFDDGLHRAGDIYLKAQFWIPNAEREKICGLLD*HKLTLQPCTHSVQNERLPIRAEVQGLYFEQSQLPHSIARTLLTADGAPGD 462
            +L + YL+E     +     + +    LP +    DDGL+RA D YLKA   +   ER+++C ++D  KL++  C H+ QNERLP+R  VQ L+ EQ ++ +++A T L      G+
Sbjct:  506 RLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLGE 622          
BLAST of EY659561 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 41/125 (32.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  112 QLREGYLSETDSMLHANPNNYTIWPSFLPINLGRFDDGLHRAGDIYLKAQFWIPNAEREKICGLLD*HKLTLQPCTHSVQNERLPIRAEVQGLYFEQSQLPHSIARTLLTADGAP-GDTQRAWGI 483
            +L + YL+E     + + + + +    LP +     DGL+RA D+YLKA   + +++++K+  L+D  KL+ +   H+ QNERLP+++ VQ LYFEQ +L  S+  +    +  P    Q++W I
Sbjct:  386 KLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLHDGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRI 510          
The following BLAST results are available for this feature:
BLAST of EY659561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1044_ARATH2.571e-1942.50BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ4.247e-1436.13Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
RPT3_ARATH2.753e-1335.04Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y5880_ARATH8.856e-1232.80BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659561 ID=EY659561; Name=EY659561; organism=Citrus sinensis; type=EST; length=900bp
CCAATCTTTTNTGAAACAATCTTGGGCTACTTTCCCGATGGACTACATAT
CGAATAAAATCGATAGACCTCAACATCTGCGAGCAAATCTACAACGCTGA
TGCTCCTCAGCCAATTAAGGGAGGGCTATCTTTCGGAGACTGATTCCATG
CTCCATGCAAACCCGAACAATTATACAATCTGGCCATCTTTTTTGCCCAT
CAATCTAGGACGCTTTGACGACGGACTTCACAGAGCGGGTGATATCTATC
TTAAGGCGCAGTTTTGGATACCGAATGCAGAACGAGAAAAAATATGCGGA
CTTCTGGACTGACATAAACTGACACTACAACCGTGCACACACTCGGTACA
AAACGAGCGCTTACCGATACGGGCGGAGGTCCAAGGGCTGTACTTTGAGC
AATCACAGCTACCACACTCGATTGCCCGGACACTGCTGACGGCGGATGGG
GCTCCGGGAGATACGCAGAGAGCATGGGGAATAAGACCTGATGAGATACA
GACGCAGACGGAGAGGTGAGTGGCTGGCTACGACTAGGATACCGCTAAGG
ATACCATGTGCCTCATGATGCATGGCTAGGATGATGACGCGGAAGATAAC
CTAGATAGACATGCACATCAACTAACAATGGTGCTACACGTACTTAATGA
AGCACCTCTGAGAGATGAATGGCTAAGCTCGTCTAAGCCCGGGCGCACAT
CATGATCCAGAGCTTGATTTCTTGAACACTCCGGTCAGGATGACTAAACG
ACGGGAGCATCCTGGTAGACATACACAGGGCATTCTATTGGAGTNCCGGC
TACATCCCTAATGATGAGAACGGAGATCAAACCTGTGTAGCACAGGTGAG
ATGCCCCTCGACTTGACTGTGACAGGCCTGAATCCTTGATGTATGACTAG
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