EY659560

Overview
NameEY659560
Unique NameEY659560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_GRABC (Elongation factor Ts OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tsf PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.214e-28
Identity = 81/212 (38.21%), Postives = 121/212 (57.08%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE T A M D K AL + + D+EAA+  LRK+G   A+KKS R A EGL+ +A     AA++E+N ETDFV+RNE+FQ               V++       VG E +E +K     P  G E TV   +T + A +GEN+ +RR  +LS     VV++Y+H+  + GLG+I  L+++E    +S    L+ +G ++GM + A  P
Sbjct:    8 LVKELRETTGAGMMDCKKALSETNGDLEAAIDWLRKKGLSAAAKKSGRVAAEGLVGVASAPQTAAMVEVNAETDFVARNELFQAF-------------VTETARVALTVG-EDVEAIKA---APYPGTERTVAEQLTHLVATIGENMNIRRARVLSVPQ-GVVASYIHSPVKPGLGKIGVLVAVE---SASEISALETLGRQVGMQVAAANP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_GLUOX (Elongation factor Ts OS=Gluconobacter oxydans GN=tsf PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.197e-28
Identity = 80/212 (37.74%), Postives = 121/212 (57.08%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+++LRE T A M D K AL +   D+EAA+  LR +G   A+KKS RT  EGL+ +A  +++AA++E+N ETDFV RNE FQ               V Q       VG + L+ +K      K+    TV + +T + A +GEN+ +RR  +LS  S  VV++Y+H++ + G+G+I  L +LE     S  D L  +G ++GMH+ A +P
Sbjct:    8 LVRELREATGAGMMDCKKALTEAAGDMEAAIDWLRTKGLSQAAKKSGRTTAEGLVGVASAKNRAAMVEVNAETDFVGRNEAFQAF-------------VEQVAHVALEVGDD-LDAIKAG----KVPSGRTVADELTHLIATIGENMAIRRAKVLSVES-GVVASYVHSALRPGIGKIGVLAALE---APSESDALLTLGRQIGMHVAATRP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHORT (Elongation factor Ts OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.221e-27
Identity = 83/215 (38.60%), Postives = 124/215 (57.67%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGE-TTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLK--RVGSELGMHIVAQKP 735
            L+K LREQT A M D K AL +   D+EAA+  LRK+G   A+KK+ RTA+EGL+ +A   +  AV+E+N ETDFV+RN+ FQ                 +  + L       +E LK +  +P  GGE  TV+  +T + A +GEN++LRR   L      VV++Y+HT+ + GLG+I  L++L+     S+ DP K   +G ++ MH+ A +P
Sbjct:    8 LVKSLREQTGAGMMDCKKALTETAGDVEAAIDWLRKKGLAAAAKKAGRTASEGLVGIATAGTAGAVVEVNAETDFVARNDTFQ--------------GFVETVASLTLAAKGDIEALK-SAAYP--GGEGRTVEAQVTHLIATIGENMQLRRSAALEVEQ-GVVTSYMHTAVKPGLGKIGVLVALK-----SAADPAKLDELGRQIAMHVAAAQP 199          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_ACICJ (Elongation factor Ts OS=Acidiphilium cryptum (strain JF-5) GN=tsf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.641e-27
Identity = 74/213 (34.74%), Postives = 118/213 (55.40%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K ALV+ D D+EAA+  LRK+G   A+KKS RTA EGL+ +A   ++A+++E+N ETDFV+RNE FQ +            E+V    +  FP                  G   +V + +  + A +GEN+ +RR  ++      V ++Y+H + + GLG+I  L++LE      + + L  +G ++GMH+ A +P
Sbjct:    8 MVKDLREKTGAGMMDCKKALVETDGDMEAAVDWLRKKGLAAAAKKSGRTAAEGLVGVAHEGNRASMVEVNAETDFVARNEAFQNFVETVAKLALTVGEDVEALKAAAFP------------------GKSHSVADELVSLVATVGENMSIRRAAVVEVKD-GVAASYVHGALKPGLGKIGVLVALE----GKADEALSTLGRQIGMHVAATRP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_METNO (Elongation factor Ts OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=tsf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.916e-27
Identity = 81/212 (38.21%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ             E            G E LE           G +TTV++ + E+ A +GEN+ LRR   L+     V++TY+H+    GLG+I  L++LE  DG   F  L  +G ++ MH+ A  P
Sbjct:    8 MVKDLREKTGAGMMDCKSALNETAGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAAVVEVNSETDFVARNDSFQAFVREAAKVALNAEG-----------GVEALEAAHFP------GSQTTVKDRLQELIATIGENMTLRRTAKLTVEK-GVIATYVHSQVSEGLGKIGVLVALE-SDGDVGF--LSTLGRQIAMHVAATNP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHOCS (Elongation factor Ts OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=tsf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.928e-26
Identity = 79/214 (36.92%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLE-VGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+K+LRE+T A M D K AL +   D+EAA+  LRK+G   A+KKS R A EGL+ +    +  A +E+N ETDFV+RNE FQ +            ++V +  S  FP                  G   TV   +T + A +GEN+ +RR   LS +   +VSTY+H+S    LG+I  L++LE  GD +     L+ +G ++ MHI A +P
Sbjct:    8 LVKELREKTGAGMMDCKKALTETSGDMEAAVDWLRKKGLAAAAKKSGRVAAEGLVGVVAAPTAGACVEVNAETDFVARNETFQNFVAKVTELALTTGDDVEKLQSQPFP------------------GTGRTVAEELTHLVATIGENMTIRRAARLSVTQ-GIVSTYMHSSLVPNLGKIGVLVALESAGDQAK----LQELGKQIAMHIAAARP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_MESSB (Elongation factor Ts OS=Mesorhizobium sp. (strain BNC1) GN=tsf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.928e-26
Identity = 76/213 (35.68%), Postives = 110/213 (51.64%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            L+KQLRE T A M D K AL +   D+EAA+  LRK+G   A KK+ RTA EGL+ LA + + A  +E+N ETDFV+RN+ FQ             + NV    +  +P                  G   +V +A+ +  A +GEN+ LRR   LS S    V+TY+H S   GLG+I  L+++E      + +  +  G ++ MH+ A  P
Sbjct:    7 LVKQLREVTGAGMMDCKTALAETGGDLEAAVDWLRKKGISKADKKAGRTAAEGLIGLAADATSAVAVEVNSETDFVARNDAFQELVRNIAQVALGTDGNVEAVSAASYP------------------GSGKSVADAVRDAIATIGENMALRRSAKLSVSK-GAVATYVHNSVSEGLGKIGVLVAIET---EGNAEAARNFGRQVAMHVAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_RHIME (Elongation factor Ts OS=Rhizobium meliloti GN=tsf PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 73/212 (34.43%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ                   G     +G +          +P  G   +V++ I +  A +GEN+ LRR  LL      VV+TY+H +   G+G++  L++L+    +   + L  +G ++ MH+ A  P
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASSGTKAVVVEINSETDFVARNDAFQELVR---------------GVANVALGTDGSVAAVSKATYPATG--KSVEDTIKDAIATIGENMTLRRSALLEVED-GVVATYVHNAAGEGIGKLGVLVALK---STGDKEALNAIGRQVAMHVAATNP 197          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_MAGSA (Elongation factor Ts OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tsf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.752e-26
Identity = 77/213 (36.15%), Postives = 118/213 (55.40%), Query Frame = 1
Query:   97 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            +L+K+LRE+T A M D K AL +   D+EAA+  LRK+G   A+KK+ R A EGL+ +A   +K   +E+N ETDFV+RN+ FQ               V+   +     G + +E +K        G +  V + +T + A +GEN+ LRR   L  S+  VV++Y+HT+   GLG+I  L++LE    + + D L  VG ++ MH+ A  P
Sbjct:    7 SLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGTKGVAVEVNAETDFVARNDQFQGF-------------VASVAAVALDKGAD-VEAIKAAACP---GTDKNVADQLTHLIATIGENMSLRRAVRLEVSA-GVVASYVHTAIAPGLGKIGCLVALE---STGNVDRLNEVGKQIAMHVAAANP 198          
BLAST of EY659560 vs. ExPASy Swiss-Prot
Match: EFTS_SINMW (Elongation factor Ts OS=Sinorhizobium medicae (strain WSM419) GN=tsf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.143e-25
Identity = 73/212 (34.43%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  100 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPEVVSTYLHTSPQSGLGRIAGLLSLEVGDGSSSFDPLKRVGSELGMHIVAQKP 735
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A   +KA V+E+N ETDFV+RN+ FQ                   G     +G +          +P  G   +V++ I +  A +GEN+ LRR  +L      VV+TY+H +   G+G++  L++L+    S   + L  +G ++ MH+ A  P
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASAGAKAVVVEINSETDFVARNDAFQELVR---------------GVANVALGTDGSVAAVSKATYPATG--KSVEDTIKDAIATIGENMTLRRSAMLEVED-GVVATYVHNAAGEGIGKLGVLVALK---SSGDKEALNAIGRQVAMHVAATNP 197          
The following BLAST results are available for this feature:
BLAST of EY659560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_GRABC3.214e-2838.21Elongation factor Ts OS=Granulibacter bethesdensis... [more]
EFTS_GLUOX4.197e-2837.74Elongation factor Ts OS=Gluconobacter oxydans GN=t... [more]
EFTS_RHORT1.221e-2738.60Elongation factor Ts OS=Rhodospirillum rubrum (str... [more]
EFTS_ACICJ4.641e-2734.74Elongation factor Ts OS=Acidiphilium cryptum (stra... [more]
EFTS_METNO7.916e-2738.21Elongation factor Ts OS=Methylobacterium nodulans ... [more]
EFTS_RHOCS3.928e-2636.92Elongation factor Ts OS=Rhodospirillum centenum (s... [more]
EFTS_MESSB3.928e-2635.68Elongation factor Ts OS=Mesorhizobium sp. (strain ... [more]
EFTS_RHIME6.701e-2634.43Elongation factor Ts OS=Rhizobium meliloti GN=tsf ... [more]
EFTS_MAGSA8.752e-2636.15Elongation factor Ts OS=Magnetospirillum magneticu... [more]
EFTS_SINMW1.143e-2534.43Elongation factor Ts OS=Sinorhizobium medicae (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659560 ID=EY659560; Name=EY659560; organism=Citrus sinensis; type=EST; length=941bp
GACTTATTCTCATTCAAATACCTGAACCCAAAATCCTCTTTTGCTTTAAT
TTCAAGAAACTTCAGTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATC
TCATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAG
TTGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATT
GAGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCA
CTGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATT
GAGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTA
CTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCAC
AGCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTG
AAGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAA
TGCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGA
GGGGTTTTTTACTATCTGCATCTTCACCTGAGGTTGTTTCTACCTACCTN
CACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGACTTCTATCTCT
TGAAGTAGGAGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGAT
CAGAATTGGGCATGCATATAGTTGCTCAAAAGCCATTATTTCTGACAAAG
GAGCTGTTTCTGCTGATGCTTTANAGAATGACGTGAAATTCTTAAATCTC
AGGCCGAAAGTACCAGGGAAGCCTTCATGGCGGATGAAAAATGGTGGAAG
GCGGTTGCGTAATACTATGAAAAATGGTCTGATGAACAAAAATTGGCTGA
CGATACTCTAATTTAAGACAATCTGAATATTCTTCAAGGAG
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