EY659531
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 2.606e-44 Identity = 77/143 (53.85%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHERWDPHSDMGVDDERKCLPNKVNRDAVAPGQKHREGLKGMADQARRFDMIADDSISTGGLYMSSMPIDEPIIKVEQ*NMSK 546
DYTLHV P+NMENKNSRQ+LEEI+N LL LSKLQHAPSV FQE PPD+E + DE QEDG +RWDP SDM VDD+RK +P++V R+AV P K ++GLKG+ ++ + ++ D+S ST ++ + ++E +K+E+ +K
Sbjct: 348 DYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDVDDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEASVKMEEEGTNK 490 HSP 2 Score: 40.0466 bits (92), Expect = 2.606e-44 Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VALGV+V DKMP H+ Y+YFGP
Sbjct: 326 VALGVEVEDKMPEHEYYEYFGP 347
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.896e-24 Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHERWDPHSDMGVDD--------ERKCLPNKVNRDAVAPGQKHREGLKGMADQARRFDMIADD---SISTGGLYMSSMPIDEP 513
DYTLHV P+NMENKN+RQ L++I++KL SKL+HAPSV FQE PD+E+ + DE Q+D ER DP SDM VDD R L K+ R+ + ++G + +A + R + +A+D S S+M IDEP
Sbjct: 353 DYTLHVAPSNMENKNTRQQLDDIRSKL----SKLRHAPSVHFQERVPDTEIPEQDEDQDDPDERHDPDSDMEVDDHKAVEESSRRSILGIKIKREFGENATRVQDGGR-VASEHRGLEPMAEDIGSSKQAPQADASAMAIDEP 490 HSP 2 Score: 31.5722 bits (70), Expect = 6.896e-24 Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VALG + DKMP ++ Y+YFGP
Sbjct: 331 VALGQEPEDKMPVNEYYEYFGP 352
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.022e-14 Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHERWDPHSDMGVDDERKCLPNKVNRDAVAPGQKHREGLKGMADQARRFDMIADDSISTGGLYMSSMPIDE 510
D+ LH+ P+NM N+N+ + LE+IKN+L E L L HAP VQ Q IP D+ ++D+ + + P S D +++ +P D+ G+ R + Q +R + D + + SS DE
Sbjct: 338 DFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKDDRLPQS----DKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNSNKASSETSSEIKDE 464 HSP 2 Score: 32.7278 bits (73), Expect = 2.022e-14 Identity = 11/22 (50.00%), Postives = 20/22 (90.91%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL V++A+++P++D ++YFGP
Sbjct: 316 VALAVEIANELPYNDYFEYFGP 337
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.332e-12 Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHERWDP 318
DYTLHV P+ MEN N+ + +E I+N LLE LS L HAPSVQFQ PP + + DE ++D R P
Sbjct: 352 DYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRV--LDEPEDDMETRPKP 416 HSP 2 Score: 29.6462 bits (65), Expect = 1.332e-12 Identity = 10/22 (45.45%), Postives = 19/22 (86.36%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VA+GV+ +K+P+++ ++YFGP
Sbjct: 330 VAVGVEPDNKLPYNEYFEYFGP 351
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 6.378e-12 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDS-ELAQADEHQEDGHER 309
D+ LH+ P+NM N+N+ + LE+IK +L E L L HAP VQ Q IP D+ + DE +ED +R
Sbjct: 340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKR 404 HSP 2 Score: 28.8758 bits (63), Expect = 6.378e-12 Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL ++ +++P++D ++YFGP
Sbjct: 318 VALDTEIPNELPYNDYFEYFGP 339
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 1.388e-11 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHERWDPHSDMGVDDER 348
D+ LH+ P+NM N+N+ + L++IK +L E + + HAP VQ Q IP D+ D ED E D + D+R
Sbjct: 339 DFKLHISPSNMTNQNTGEYLDKIKTRLYENMRMIPHAPGVQMQPIPEDA--IPDDSDAEDEAENPDKRISIMAQDKR 413 HSP 2 Score: 33.4982 bits (75), Expect = 1.388e-11 Identity = 11/21 (52.38%), Postives = 20/21 (95.24%), Query Frame = 3
Query: 54 ALGVKVADKMPHHDSYDYFGP 116
ALGV++A+++P++D ++YFGP
Sbjct: 318 ALGVEIANELPYNDYFEYFGP 338
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.395e-11 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQA-DEHQEDGHER 309
D+ LH+ P+NM N+N+ + LE+IK +L E L L HAP VQ Q IP D+ ++ DE +ED +R
Sbjct: 340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKR 404 HSP 2 Score: 28.8758 bits (63), Expect = 1.395e-11 Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL ++ +++P++D ++YFGP
Sbjct: 318 VALDTEIPNELPYNDYFEYFGP 339
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.395e-11 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQA-DEHQEDGHER 309
D+ LH+ P+NM N+N+ + LE+IK +L E L L HAP VQ Q IP D+ ++ DE +ED +R
Sbjct: 340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKR 404 HSP 2 Score: 28.8758 bits (63), Expect = 1.395e-11 Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL ++ +++P++D ++YFGP
Sbjct: 318 VALDTEIPNELPYNDYFEYFGP 339
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.395e-11 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQA-DEHQEDGHER 309
D+ LH+ P+NM N+N+ + LE+IK +L E L L HAP VQ Q IP D+ ++ DE +ED +R
Sbjct: 340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKR 404 HSP 2 Score: 28.8758 bits (63), Expect = 1.395e-11 Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL ++ +++P++D ++YFGP
Sbjct: 318 VALDTEIPNELPYNDYFEYFGP 339
BLAST of EY659531 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.812e-11 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 118 DYTLHVGPNNMENKNSRQLLEEIKNKLLEYLSKLQHAPSVQFQEIPPDSELAQADEHQEDGHER 309
D+ LH+ P+NM N+N+ + LE+IK +L E L L HAP VQ Q IP D+ ++ + ED ++
Sbjct: 340 DFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDK 403 HSP 2 Score: 28.8758 bits (63), Expect = 1.812e-11 Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 3
Query: 51 VALGVKVADKMPHHDSYDYFGP 116
VAL ++ +++P++D ++YFGP
Sbjct: 318 VALDTEIPNELPYNDYFEYFGP 339 The following BLAST results are available for this feature:
BLAST of EY659531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659531 ID=EY659531; Name=EY659531; organism=Citrus sinensis; type=EST; length=859bpback to top |