EY659528

Overview
NameEY659528
Unique NameEY659528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659528 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.906e-29
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 LFF*FGVVTKLALNCDRISVSVGDDALIVISQ*CRNLTRLKLRACRELTDAGM*LFAKNCKGLRKLSWGSCAVGAKGMSAVLDNCSTLEELSVNRLR 291
            LF  F  VTKL+L CDR SVS+GD+AL+ IS  CRNL RLKLRACRELTD GM  FA+NCK L+  S GSC  GAKG+ AVLD+CS LEELS+ RLR
Sbjct:   96 LFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKRLR 192
[Close]
BLAST of EY659528 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.481e-27
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 LFF*FGVVTKLALNCDRISVSVGDDALIVISQ*CRNLTRLKLRACRELTDAGM*LFAKNCKGLRKLSWGSCAVGAKGMSAVLDNCSTLEELSVNRLRRNH 300
            +F  F  VTKLAL CDR SVS+ D+AL +IS  C NLTR+KLR CRE+TD GM  FAKNCK L+KLS GSC  GAKG++A+L++C  LEELSV RLR  H
Sbjct:   99 MFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIH 198
[Close]
BLAST of EY659528 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 LFF*FGVVTKLALNCDRISVSVGDDALIVISQ*CRNLTRLKLRACRELTDAGM*LFAKNCKGLRKLSWGSCAVGAKGMSAVLDNCSTLEELSVNRLRRNH 300
            +F  F  VTKLAL CDR S S+ D+AL ++S  C NL R+KLR CRE+TD GM  FA+NCK LRKLS GSC  GAKG++A+L++C  LEELS+ R+R  H
Sbjct:   97 IFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLH 196
[Close]
BLAST of EY659528 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 LFF*FGVVTKLALNCDRISVSVGDDALIVISQ*CRNLTRLKLRACRELTDAGM*LFAKNCKGLRKLSWGSCAVGAKGMSAVLDNCSTLEELSVNRLR 291
            LF  F  VTKL L  DR S+ + D+A ++IS  CRNLTRLKLR C E++D G+  F +NC+ L+K+S+GSC  G KGM+A+L+ C  LEELSV RLR
Sbjct:  130 LFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKRLR 226
The following BLAST results are available for this feature:
BLAST of EY659528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FB37_ARATH5.906e-2968.04F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
SKIP2_ARATH2.481e-2764.00F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH2.100e-2659.00F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FBL8_ARATH1.409e-2255.67Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659528 ID=EY659528; Name=EY659528; organism=Citrus sinensis; type=EST; length=882bp
CTTTTCTTTTGATTCGGCGTCGTCACGAAACTTGCCCTCAACTGTGACCG
TATATCCGTGAGCGTTGGGGACGACGCGCTTATTGTAATTTCTCAATAGT
GCCGCAACCTCACGCGGCTGAAGCTCCGCGCTTGTCGTGAGCTGACGGAC
GCCGGCATGTGATTGTTTGCTAAAAACTGCAAGGGTTTGAGGAAGCTCTC
CTGGGGATCTTGCGCTGTTGGAGCCAAGGGCATGAGCGCAGTGCTCGATA
ACTGCTCGACTCTCGAAGAGTTATCGGTTAACCGGCTTCGCAGGAATCAC
AGATGGAGCCGCGGCTGAGCCGATTGGACCTGGCGCGGCTGCCTCTGCGC
TTAAAACTGGTTGCCTAAGTAATCATGAGGCGCGTCTGTGCTGAAGTAGC
TCGAAATGTTTCTGTGCTGCTACGTTGGCGTCGCTATAAGTTTTGGCTAT
CTCTTCCCCTATACAACGGAGAAGGTGAGCGATTAGTCTTTACATAGCCA
AAGAGCGGTGGATATGAACATATATTCAAGGCTTCCCTGGGATTCATAAT
CGGAGCCTCTGAGCATGCTGCTCAGCGCTAATAGAAGCTTTAATTGAAAA
TGTATTGAAGATAGCCCAAGTCGTGTCATTATTTACAGGCCCCTAATCGC
TGTCGGTGTGAAGCCACCAATATGTTTGCCGGTTGGACCATGTCACTGAT
GTCATAAGGAAAAAAGGGGCGGCCTGTTCTAAGGGGCCAAGGTTTACTTA
CGCGTGCCTGGCAACGACAAACCCTTTTTTTGGTGGGACCTAATTTATAT
TAGTGGGGCGGGGTTTTACATCCGTCGGACCGGAAAAACCCTGGGGGACC
AAATTATTGGGCTGGGGGACAATCCCCTCTTC
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