EY659510

Overview
NameEY659510
Unique NameEY659510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7167 contig Csv1_Contig7167:503..1403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659510 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.803e-31
Identity = 83/165 (50.30%), Postives = 99/165 (60.00%), Query Frame = 3 
Query:    3 EDEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXXXXTCTNAPMSQ--IGAKDGKLRSSVSSLRCNQV-LDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPT 488
            EDEH RFLEAL+LYGRAWQRIEEHIGTK AVQIRSHAQKFF+KLEKEA  KG+P+ QA+DI+I                   N   S     AKD KL SS SS + NQ  LDLEK P  ++ +          + K+N        Q+ +CS VS+VNK  +PT
Sbjct:   29 EDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTS----------TGKEN--------QDENCSGVSTVNKYPLPT 175
[Close]
BLAST of EY659510 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.036e-28
Identity = 83/193 (43.01%), Postives = 111/193 (57.51%), Query Frame = 3 
Query:    3 EDEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXXXXTCTNA-PMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIES--QKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRE 572
            E+EHNRF+EAL+LYGRAWQ+IEEH+ TK AVQIRSHAQKFFSK+EKEA +KGV +GQA+DI I                T +    MS+ G  DGK           + L  EK    +  N D + +   E   Q+DNCS+ F  HQ  + S+ SS+NK+ + T     ++   REF+PS +E    +  R+
Sbjct:   29 EEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGVNDGK-----------ESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSDCF-THQ--YLSAASSMNKSCIET----SNASTFREFLPSREEGSQNNRVRK 203
The following BLAST results are available for this feature:
BLAST of EY659510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHY_ARATH3.803e-3150.30Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH1.036e-2843.01Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659510 ID=EY659510; Name=EY659510; organism=Citrus sinensis; type=EST; length=900bp
CAGAGGATGAGCATAATAGGTTTCTAGAAGCGCTGAAGCTTTATGGCCGT
GCTTGGCAACGCATAGAAGAACATATAGGGACAAAGAAAGCTGTGCAGAT
CAGAAGTCATGCACAAAAATTCTTTTCCAAGTTGGAGAAGGAGGCTCTTT
CTAAAGGGGTTCCTATAGGTCAAGCAATTGACATAGACATTCCTCCTCCA
CGTCCTAAAAGGAAACCACGCAATCCTTATCCTCGAAAGACCTGCACAAA
TGCTCCTATGTCACAGATAGGAGCAAAGGATGGGAAACTTCGAAGTTCAG
TTTCTTCTTTGCGTTGCAATCAAGTGCTGGACTTGGAGAAAGAACCAATT
TGTGATAGGCCTAATGGTGATGAGAAGCCAACTTATACTATCGAAAGTCA
GAAGGACAACTGCTCGGAAGTGTTTATACTGCACCAAGAAGCTCACTGTT
CCTCTGTTTCTTCTGTGAATAAAAACTCCATGCCAACACCAGTGGGGCTC
AGAGACTCTTGCAATCTCAGGGAATTTGTTCCATCACTGAAAGAAGTGGT
AAATCAGGATGAAACACGTGAATCTTATGTCACTGTTGAACTTAAAGCAA
ATGAGAAGTTTGGTAAACCTGATGCCAAACTGGCACTTCAGGATAATGGC
TCAAGTAAACCCTTGAACTTGGAGAACGCCTGCCCTTCCATGAGAAGTCA
GTTCATGGTGAAAAAAGAGATGATGTGGCCGATGCATTGCCGACGGCTGA
GGGTGCAGCTACGCANAACTATCCAAGGCACGNTAATGTGCACATTCTAN
ATGGGAGCCNTGGNACAGGTACTCAAAGCCCTTCAGAATGCCTATGCAGG
AGTCATATTTCATCCTTAAGGAGAGTTCATGGAATCCTATCTGTTCACAA
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