EY659493

Overview
NameEY659493
Unique NameEY659493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659493 vs. ExPASy Swiss-Prot
Match: C3H51_ARATH (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.179e-61
Identity = 121/193 (62.69%), Postives = 146/193 (75.65%), Query Frame = 3
Query:  204 VFKMAESGSGEA--QQAEQVCNFFRKPTKNKNIRKRTIRXXXXXXXXXXX--VLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLKRSEDALKG--KASGDEKLYKGIHGYVDHKAGFPREHTVSSEKAGGSHGPLRASAHIRVTXRVD 764
            V  MAE G+  +  Q+++QVC FF+KPTK+KNIRKRTI              +LQNLKK  KPDS LYFS+GPS R + A      E+P+F ++SSKEIQVQ+DS ATATLETETDF +D+RA+RE+VLK+++ ALKG  K + DEKLYKGIHGY DHKAGF RE T+SSEKAGGSHGPLRASAHIRV+ R D
Sbjct:   48 VMNMAEFGNDNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYFSSGPSTRTSGAP-----ERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFD 235          

HSP 2 Score: 31.5722 bits (70), Expect = 1.179e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  764 YXPDICRDTRDC-YCGYGD 817
            Y PDIC+D ++  YCGYGD
Sbjct:  236 YQPDICKDYKETGYCGYGD 254          
BLAST of EY659493 vs. ExPASy Swiss-Prot
Match: C3H1_ARATH (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 5.800e-61
Identity = 116/183 (63.39%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  228 SGEAQQAEQVCNFFRKPTKNKNIRKRTIRXXXXXXXXXXX--VLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLKRSEDALKG--KASGDEKLYKGIHGYVDHKAGFPREHTVSSEKAGGSHGPLRASAHIRVTXRVD 764
            + +  Q++QVC FF+KPTK+KNIRKRTI              +LQNLKK  KPDSKLYFS+GPSK  T+  ++   E+ +F ++SSKEIQVQ+DS ATATLETETDF +D+RA+RE+VLK++++ALKG  K + DEKLYKGIHGY DHKAGF RE T+SSEKAGGSHGPLRASAHIRV+ R D
Sbjct:   20 AAQETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSKSSTT--TSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFD 200          

HSP 2 Score: 31.5722 bits (70), Expect = 5.800e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  764 YXPDICRDTRDC-YCGYGD 817
            Y PDIC+D ++  YCGYGD
Sbjct:  201 YQPDICKDYKETGYCGYGD 219          
BLAST of EY659493 vs. ExPASy Swiss-Prot
Match: C3H15_ORYSJ (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.781e-40
Identity = 96/194 (49.48%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  225 GSGEAQQ--AEQVCNFFRKPTKNKNIRKRTIRXXXXXXXXXXX----VLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLKRSEDALK--------GKASGDEKLYKGIHGYVDHKAGFPREHTVSSEKAGGSHGPLRASAHIRVTXRVD 764
            G GEA    +  VC+F RKP KN  IRKR                       KK     SKL+FS        SAD +++  +  FQ+ESS+ IQ   DS+ATATLETET+F RD+RA+RE+ LK++E++LK           SG  ++YKGIHGY D+KAGF REHTVSSEKAGGSHGPLRASAHIR++ R D
Sbjct:    6 GGGEAGSGGSAPVCSFVRKPPKN--IRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFS--------SADGSSEPRR--FQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSARFD 187          

HSP 2 Score: 31.5722 bits (70), Expect = 1.781e-40
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  764 YXPDICRDTRDC-YCGYGD 817
            Y PDIC+D ++  YCGYGD
Sbjct:  188 YQPDICKDYKETGYCGYGD 206          
The following BLAST results are available for this feature:
BLAST of EY659493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C3H51_ARATH1.179e-6162.69Zinc finger CCCH domain-containing protein 51 OS=A... [more]
C3H1_ARATH5.800e-6163.39Zinc finger CCCH domain-containing protein 1 OS=Ar... [more]
C3H15_ORYSJ1.781e-4049.48Zinc finger CCCH domain-containing protein 15 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659493 ID=EY659493; Name=EY659493; organism=Citrus sinensis; type=EST; length=975bp
CAGCCCTCGGTCCGGNATTAAAAGGCCCGACCCACGCGTCCGATTAGAAT
CTCNNAATTCAGGATTTCAATCGAAATCCTCAATCATATTCCCAATTGCA
ACTCTATACTCTCGCACGACGTTCATCGACCTCCGGAAACTGATATCGCC
GTCACCAGGAAACCGCACAAAAGAATTTTGAGCTTCGGAGCTCTGCGCTT
TTTGTTTTCAAAATGGCAGAGTCGGGTTCAGGCGAAGCTCAACAGGCTGA
ACAAGTCTGCAACTTCTTTAGAAAGCCAACTAAGAATAAAAACATCAGAA
AGAGAACTATTAGGGAAGATGAAGACGAAGATTCAATTGAAAGCTCAGTG
TTACAGAACCTGAAGAAACCTACAAAGCCTGATAGTAAGCTTTACTTTTC
AACTGGTCCTTCTAAGAGGGACACATCTGCTGATTCAAATGCTGATTCTG
AAAAGCCAATATTTCAGTTTGAGTCTTCAAAGGAAATTCAAGTTCAACAC
GACAGCAAAGCTACTGCAACCCTAGAAACTGAGACTGATTTCTTGAGGGA
CTCTCGTGCTCTTCGTGAGAAAGTACTTAAACGATCAGAGGATGCTTTGA
AGGGTAAAGCCTCTGGTGATGAGAAGTTGTATAAAGGGATTCATGGGTAC
GTTGATCACAAAGCTGGGTTCCCGAGAGAGCACACGGTTTCAAGTGAGAA
AGCTGGCGGGTCTCATGGGCCTCTTAGGGCTTCAGCTCATATAAGGGTGA
CTGNCAGGGTTGATATCANCCAGACATTTGTAGGGATACAAGAGACTGTT
ATTGTGGGTACGGAGATCATGTAGGTTATGCCTGATCGAGTGATTACANT
CTGGTTGGCNATGGAAAAGATGGGGAGGATCNAAAGGGCAGGAANAAAAT
TGGCTTGGGAGGGGGGATCAATGAAAAGTGGTGGCCAATGAGACACCAAA
GATCCATGCCTTGCTTGTAATGGAA
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