EY659481

Overview
NameEY659481
Unique NameEY659481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659481_ssr109 microsatellite EY659481_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659481 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein yuiD OS=Bacillus subtilis GN=yuiD PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:  214 KRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLSSVRPLRELLGHTPLQVVAGGILGCVVAFLM 549
            ++ D   +  +GGMPSSHSA V+AL+  + L+ G  S  FA++ + A I M+DA+GVR HAG QA ++N++V           +FP        + L+ELLGH P++V  GG+ G ++  ++
Sbjct:   32 RKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVL 153
The following BLAST results are available for this feature:
BLAST of EY659481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YUID_BACSU3.591e-1837.70Uncharacterized membrane protein yuiD OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659481 ID=EY659481; Name=EY659481; organism=Citrus sinensis; type=EST; length=884bp
AGGCTCGGGCCGGNATTAAAAGCCCGACCCAGCGTNCGGGTGATTTTGNT
AGGAGATGCGGNGNAGAATAGCCGTGGNNAAGCGACGTCCTTTTTGGATT
CTCCTCCATCGTCGTCGTCGCTGTTCTTCCCTAACAACCTCCCTCTGATC
TCCGCATTTCTCGCCTTTGCTCTTGCTCAATTCCTCAAGATCTTCACCAC
TTGGTATAAAGAAAAGAGATGGGATTCTAAAAAGATGCTTGACTCTGGTG
GAATGCCTTCGTCACATTCTGCTACTGTGTCGGCTCTAGCAGTAGCTATT
GGTCTGCAAGAAGGGTCAGGAAGTCCATCTTTTGCCATTGCAGTGGTCTT
GGCTTGCATTGTAATGTATGATGCCTCTGGGGTCAGACTACATGCTGGTC
GGCAAGCTGAATTGCTGAATCAAATAGTATGTGAGTTTCCTCCAGACCAC
CCATTGTCTAGCGTTAGACCTCTACGTGAATTACTTGGTCATACCCCGTT
ACAGGTTGTGGCCGGTGGTATTTTGGGATGCGTTGTAGCGTTTCTGATGA
GAAACTCGAACTAGATCATTACAAGATCAACATTGATTATTTGTTTCGTC
TCCAATTGGCCGATTACCTGGTAGATATAGGCAGCAGCTCGGCTGGGAGA
TACAGTGACCTAACCANAGTATAATGTATTCAGNCGGTATTCTGTATTGA
TTTTGGGGTTTATTTGGAGACGGGAGACTATGTTTTTTTGTAACCCAAGA
ACCTCATTTGGGAAACTAAAACCTCGGGAAAAAAAGGCACTTAAAAACCT
TGGTAACCTAATAAAACGGAACTTTTTTTCTTTTGAAAAAAAAAAAAAAG
GCCGGCCGGTCTAAGGATCCAACCTTACCGACCG
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