EY659478

Overview
NameEY659478
Unique NameEY659478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9954 contig Csv1_Contig9954:222..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659478 vs. ExPASy Swiss-Prot
Match: SIZ1_ORYSJ (E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.602e-51
Identity = 116/259 (44.79%), Postives = 157/259 (60.62%), Query Frame = 3
Query:   78 SGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVV-----SNSXTKQLVNSGQ-TIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNS-----EKIITMSSSASGCSRDEEDPTVNQDTNSRKD--LNDIPHRIDPI---FGTGNQTDG----PIGDTDIIVLSDSEEEYDHL-APSTSYSPT 791
            SGSR+R+AGRFKPC+H GCFDLETFVELNQR+RKWQCPIC+KNYSLE L+IDPYF+RIT+++RN  +D+ E++VK DGSWRVK    +  L++WH PDG+    + +V       N    +  + GQ ++   IK+N +   +VS          +   ++NNS       I+ MS+S +   RD EDP+VNQ++N   D  LN+  +  D     FG    TD         TD+IVLSDS+EE D +  P   Y  T
Sbjct:  367 SGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPYFNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNPKEDVKPAMQNGNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQQQHNATDVIVLSDSDEENDAMVCPPAVYDNT 625          
BLAST of EY659478 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.579e-48
Identity = 113/261 (43.30%), Postives = 160/261 (61.30%), Query Frame = 3
Query:   75 MSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGEN-----NNLAEWHSPDGSTYAARSEVVSNSXTKQLVNSGQT-----IIARIKKNLSANVDVSK-----YWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKD-------LNDIPHRIDPIFGTGNQT-DGPIGDTDIIVLSDSEEEYD-HLAPSTSYS 785
            MSGSRI+VAGRF PCVH GCFDL+ FVELNQR+RKWQCPIC+KNYS+E +I+DPYF+RIT+ M++  +++TEIEVK DGSWRVK K E+       L++WH+PDGS   +  ++        +   G +     +   I+KN +   +VSK       S++  + + Y  +N    II MSSSA+G  RD +D +VNQD     D       L+ I   +D  +   ++   G  G+ ++IVLSDS++E D  + P  +YS
Sbjct:  365 MSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKN----IIPMSSSATGSGRDGDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAYS 621          
BLAST of EY659478 vs. ExPASy Swiss-Prot
Match: SIZ2_ORYSJ (E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 98/239 (41.00%), Postives = 148/239 (61.92%), Query Frame = 3
Query:   75 MSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYA---ARSE----VVSNSXTKQLVN--SGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSR----DEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGPIGDTDIIVLSDSEEE 752
            M+GSRI++AGRFKPCVH GCFDLE FVELNQR+RKWQCPIC+KNYSL+++IIDPYF+RIT ++++  DD++EI+VK DGSWRVK   E   LA+WH PDG+       RS+    +V     ++ ++  +G  +   I++N +   +++K    S N    Y  + N   +++ S++    S+    + E    +Q T++  DL+  P  +D  F           + D+IVLSDS+++
Sbjct:  376 MTGSRIKIAGRFKPCVHMGCFDLEAFVELNQRSRKWQCPICLKNYSLDNIIIDPYFNRITALVQSCGDDVSEIDVKPDGSWRVKGGAELKGLAQWHLPDGTLCMPTDTRSKPNIRIVKQEIKEEPLSEETGGRLKLGIRRNNNGQWEINKRLD-SNNGQNGYIEDENC--VVSASNTDDENSKNGIYNPEPGQFDQLTSNIYDLDSSP--MDAHFPPAPT------EQDVIVLSDSDDD 603          
The following BLAST results are available for this feature:
BLAST of EY659478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SIZ1_ORYSJ2.602e-5144.79E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp.... [more]
SIZ1_ARATH1.579e-4843.30E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
SIZ2_ORYSJ3.526e-4041.00E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659478 ID=EY659478; Name=EY659478; organism=Citrus sinensis; type=EST; length=915bp
ATAGTGATTTGCTATTATTTGGCATCCCATTTGCTCGTACTTTTCACTGA
CTTTTTCTCACATGTAACTGGCAGATGAGTGGGTCTAGAATTAGAGTTGC
TGGCAGATTCAAGCCTTGTGTTCACACGGGCTGTTTTGATCTTGAAACTT
TTGTGGAGCTAAATCAGCGAACTAGGAAGTGGCAATGTCCCATATGCATG
AAGAATTACTCTCTGGAGGATCTCATCATTGACCCGTATTTTCACCGCAT
CACAACCATGATGAGAAATTTTGCTGATGACCTAACTGAGATTGAGGTGA
AGCATGATGGTTCATGGAGAGTTAAATGCAAAGGTGAGAACAACAATCTT
GCGGAATGGCATTCACCTGATGGTTCAACCTATGCTGCTAGAAGTGAGGT
TGTTTCCAACTCANAAACGAAGCAGCTCGTGAATTCTGGGCAAACTATAA
TTGCCAGGATAAAAAAGAATCTCAGTGCTAATGTAGATGTGAGCAAGTAT
TGGAGCACTTCTCCCAATAAACACATGAGCTATCATGTTGAAAATAATTC
TGAAAAAATCATTACAATGAGCAGCAGTGCCTCTGGCTGCAGCAGAGACG
AAGAAGATCCTACTGTCAATCAGGATACAAATAGTCGCAAGGATCTCAAT
GATATTCCTCATAGGATTGATCCTATTTTTGGAACTGGGAACCAAACTGA
TGGGCCGATCGGAGATACAGACATCATTGTTCTTAGCGATTCAGAAGAAG
AATATGATCACTTAGCCCCTTCCACTTCCTACAGTCCTACCATCCAATTG
ACAGTGCCCCTGACGGGATTTGTGAGTCATACTTTGAAAATCTGCTTTTG
ATGTNGGGGATGGTCCCTGTTTTGGTCCTTTTCATGGACTGTTGATGCTG
GAAGGTGGTCTAACT
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