EY659413

Overview
NameEY659413
Unique NameEY659413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659413_ssr177 microsatellite EY659413_ssr177:177..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7478 contig Csv1_Contig7478:1..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.475e-49
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = 1
Query:   16 HALFFVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKK 525
            H   F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY            K PV+L FSVN SG FCGVAEM   VD+N     W QDKW G F V+W  +KDVPN QLRHI LENN+ KPVTNSRDTQEV   +  ++L I  +Y   TSI DDF  YE RQ+  +  K
Sbjct:  409 HGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNG-------KGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 571          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.475e-49
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = 1
Query:   16 HALFFVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKK 525
            H   F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY            K PV+L FSVN SG FCGVAEM   VD+N     W QDKW G F V+W  +KDVPN QLRHI LENN+ KPVTNSRDTQEV   +  ++L I  +Y   TSI DDF  YE RQ+  +  K
Sbjct:  409 HGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNG-------KGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 571          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.475e-49
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = 1
Query:   16 HALFFVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKK 525
            H   F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY            K PV+L FSVN SG FCGVAEM   VD+N     W QDKW G F V+W  +KDVPN QLRHI LENN+ KPVTNSRDTQEV   +  ++L I  +Y   TSI DDF  YE RQ+  +  K
Sbjct:  410 HGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNG-------KGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 572          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.516e-49
Identity = 98/168 (58.33%), Postives = 115/168 (68.45%), Query Frame = 1
Query:   28 FVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKKVR 531
            F+IKSYSEDDIH+SIKYS+W ST +GNK+LD A+    S       K PV+L FSVN SG FCGVAEM   VD+  +   W QDKW G F VKW  +KDVPN QLRHI LENND KPVTNSRDTQEV   +  ++L I  +Y   TSI DDF  YE RQ+  +E+ VR
Sbjct:  392 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSS-------KGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE--EEEVVR 550          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.320e-49
Identity = 99/176 (56.25%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   28 FVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKKVRLSVSRLDQ 555
            F+IKSYSEDDIH+SIKYS+W ST +GNK+LDAAY            K P++L FSVN SG FCGVAEM   VD+N     W QDKW G F VKW  +KDVPN QLRHI LENND KPVTNSRDTQEV   +  ++L I   +   TSI DDF  YE RQ+  +E+ +R   +R  Q
Sbjct:  419 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNG-------KGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE--EEEAMRRERNRNKQ 585          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 7.320e-49
Identity = 99/176 (56.25%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   28 FVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKKVRLSVSRLDQ 555
            F+IKSYSEDDIH+SIKYS+W ST +GNK+LDAAY            K P++L FSVN SG FCGVAEM   VD+N     W QDKW G F VKW  +KDVPN QLRHI LENND KPVTNSRDTQEV   +  ++L I   +   TSI DDF  YE RQ+  +E+ +R   +R  Q
Sbjct:  419 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNG-------KGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE--EEEAMRRERNRNKQ 585          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.320e-49
Identity = 99/176 (56.25%), Postives = 117/176 (66.48%), Query Frame = 1
Query:   28 FVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKKVRLSVSRLDQ 555
            F+IKSYSEDDIH+SIKYS+W ST +GNK+LDAAY            K P++L FSVN SG FCGVAEM   VD+N     W QDKW G F VKW  +KDVPN QLRHI LENND KPVTNSRDTQEV   +  ++L I   +   TSI DDF  YE RQ+  +E+ +R   +R  Q
Sbjct:  419 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNG-------KGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE--EEEAMRRERNRNKQ 585          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.631e-48
Identity = 97/168 (57.74%), Postives = 116/168 (69.05%), Query Frame = 1
Query:   28 FVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKTSILDDFDFYESRQKVMQEKKVR 531
            F+IKSYSEDDIH+SIKYS+W ST +GNK+LD+A+    S       K PV+L FSVN SG FCGVAEM   VD+  +   W QDKW G F V+W  +KDVPN QLRHI LENND KPVTNSRDTQEV   +  ++L I  +Y   TSI DDF  YE RQ+  +E+ VR
Sbjct:  392 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSS-------KGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE--EEEVVR 550          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YD374_YEAST (YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae GN=YDR374C PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.448e-28
Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = 1
Query:    7 VRDHALFFVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQD-KWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYPSKT-SILDD 480
            + +++ FFVIKS S   + +S    +WSST  GNK+L  AY+   S     G+K  VFLFFS+N SG+FCGVAEM+  +  + +   W+ + K+   F V+W I++D+ N  L+  ++ +N+ KP+T+SRDTQE+ +  GI I+N+FK   S   S LD+
Sbjct:  151 IPENSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNS-----GAK--VFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITHSRDTQEIPYSIGISIINLFKTQDSDIFSFLDE 303          
BLAST of EY659413 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.221e-11
Identity = 44/152 (28.95%), Postives = 75/152 (49.34%), Query Frame = 1
Query:    1 PRVRDHALFFVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDAAYEDAQSRIAEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDKKPVTNSRDTQEVKFPQGIEILNIFKNYP 456
            PR      +F++KS +  ++  S +  +WS+TP+  +KL+ A+ ++            V+L FSV  SG F G + M   +   K+ D W      G F V+W   + +P     H++   ND K V  SRD QE++   G ++L +++  P
Sbjct:  523 PRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM----------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLP 663          
The following BLAST results are available for this feature:
BLAST of EY659413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YTHD2_MACFA1.475e-4956.47YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN1.475e-4956.47YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN1.475e-4956.47YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE2.516e-4958.33YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD3_PONAB7.320e-4956.25YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE7.320e-4956.25YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN7.320e-4956.25YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YTHD1_HUMAN1.631e-4857.74YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YD374_YEAST2.448e-2841.25YTH domain-containing protein YDR374C OS=Saccharom... [more]
YTDC2_PONAB1.221e-1128.95YTH domain-containing protein 2 OS=Pongo abelii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659413 ID=EY659413; Name=EY659413; organism=Citrus sinensis; type=EST; length=938bp
CCACGCGTCCGTGATCATGCTCTTTTCTTTGTCATCAAATCTTACAGTGA
GGATGACATTCACAAAAGCATTAAATACAGTGTTTGGTCTAGTACTCCAA
ATGGGAATAAGAAGCTGGATGCTGCGTATGAAGATGCACAAAGCAGGATT
GCTGAGAAAGGCAGCAAATGTCCTGTTTTTCTTTTCTTTTCGGTGAATGC
AAGTGGTCAGTTCTGTGGAGTTGCGGAGATGATAGGCCGAGTGGATTTCA
ATAAGAATATGGATTTTTGGCAACAGGATAAGTGGAATGGTTATTTCCCT
GTCAAGTGGCACATTATAAAAGATGTTCCAAACCCGCAGTTACGACATAT
AATACTTGAAAATAATGACAAGAAGCCAGTAACCAATAGCAGAGACACAC
AGGAGGTGAAATTTCCTCAGGGTATTGAAATTTTGAACATATTTAAGAAT
TATCCTTCGAAGACGTCCATATTGGATGATTTTGATTTTTATGAAAGCCG
TCAAAAGGTGATGCAAGAAAAGAAAGTAAGACTATCTGTGTCCCGTCTTG
ATCAGATTCAGATACAGTCGAAAGCAGATGACTTAACCTCCAGCTTTCAG
TCAATAGGTTTATCTGCTGTAGAAAATGTTGAGGGCTGNCAGGAAATAGG
GAAGGAAATAAGGANGGGCACGGCTTGACGGATTGATTAATGAAAGCCAA
TGGATGCACTGGGAGACTTCTTCCCCATCACTGCTGATGGCAGCACCACC
TGGACCTTGATGCAAAATAGAAGTTTGAGAAATGAAATAAGGTTTTTAAG
GAAACGCCAAGTTTTTGGCTAGTTTTGGTGGTACTTTGCCAAGCAGAATG
ATTCCCTCCACAGAAATGGAATGATCGTTGGGGGACTTTTGNATAGAACG
TGTCTTTTGNTTGCATATAAAAAGCATGATTCACCATG
back to top