EY659398

Overview
NameEY659398
Unique NameEY659398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659398 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.588e-36
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1
Query:  571 RIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAXCTEPTVLEKLCAVLNVKQRSVDRDLDVYRN 852
            R DAQK+EEWAR Q  +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELA  TEPT+L+KLCA LN+ +RSVDRDLDVYRN
Sbjct:  146 RADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRN 239          

HSP 2 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 QELFLQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRS 189
            QEL +QQHLMRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR+
Sbjct:   85 QELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRA 147          
BLAST of EY659398 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.052e-33
Identity = 69/94 (73.40%), Postives = 81/94 (86.17%), Query Frame = 1
Query:  571 RIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAXCTEPTVLEKLCAVLNVKQRSVDRDLDVYRN 852
            RIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA  K  FSYSRFFAVGLFRLLELA  T+PTVL+KLCA LN+ ++SVDRDLDVYRN
Sbjct:  152 RIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRN 245          

HSP 2 Score: 113.62 bits (283), Expect = 1.522e-24
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = 1
Query:    1 QELFLQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYR 186
            QEL +QQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYR
Sbjct:   91 QELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYR 152          
BLAST of EY659398 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.419e-32
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 1
Query:  571 RIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAXCTEPTVLEKLCAVLNVKQRSVDRDLDVYRN 852
            R DAQKLEEWAR Q A++LV+F SKEGE+E I  DIA+RA  K  F YSR FAVGLFRLLELA  T+PT+LEKLCA LNV ++SVDRDLDVYRN
Sbjct:  153 RADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRN 246          

HSP 2 Score: 114.005 bits (284), Expect = 1.166e-24
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 QELFLQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRS 189
            QEL +QQHL RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR+
Sbjct:   92 QELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRA 154          
BLAST of EY659398 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 QELFLQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYR 186
            +EL ++ HL+     +QYDPV+ALG VT + R M+GY  D D+E+IF A   ++  DP+QYR
Sbjct:   31 EELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYR 92          
The following BLAST results are available for this feature:
BLAST of EY659398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
THF1_ORYSJ6.588e-3676.60Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH1.052e-3373.40Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_SOLTU4.419e-3272.34Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_CYAP79.579e-1146.77Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659398 ID=EY659398; Name=EY659398; organism=Citrus sinensis; type=EST; length=890bp
CAGGAATTGTTTCTCCAACAACATTTGATGAGGTACAAAAGAACATACCA
ATATGACCCTGTGTTTGCCCTTGGATTTGTCACTGTATATGATCGACTCA
TGGAAGGCTATCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCATAC
ATTACGGCACTGAAGGAGGATCCAGAGCAATACAGGTCTCTCTGCTGAGT
CTCCTGTCTTTTTTATGGACTCTTTTTTCAATATAATTTGAAAACGTCGT
GATCCCTGTTGTCTTTTATTAAAACTTAACCAAATAATAACTAAATTCTT
AGTAATATCTGAGTTATATGAAGTGTGTTTCACAATTGAAAGAATTTATG
CAGAACAGATAAAGGCTAAGTGAAGAGGGCCGTACTTGAGAGTCTTAGTT
AATCCTTCCGAAACTGGAGTGTATGCTAAAAGTTTTAAGATATGCTTAGC
TACATTAGAACTGTTTCTTGAACTTTTAAGGACAGGAGCATCACATTGAA
TTGAATATTTGCAAATAAATAAAACAAAACTTCTCATTTTTTATTGAATA
ATTTGTAATTTATGCACTGCAGAATTGATGCACAAAAGTTAGAGGAATGG
GCTCGGGGTCAGACTGCCAGTTCATTAGTTGAGTTCCCATCTAAAGAAGG
AGAAGTTGAGGGGATATTGAACGACATTGCAGAAAGAGCCAGCGGCAAGG
GGAATTTCAGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTCGCCTTCTT
GAACTGGCAAANTGCACTGAACCCACAGTGTTAGAAAAGCTTTGTGCAGT
CCTTAATGTTAAACAAAGAAGTGTGGATCGTGACCTTGATGTATATCGCA
ATTTATTATCCAAGCTGCTTTCAGCTAAGAAGTGCCTGAA
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