EY659386

Overview
NameEY659386
Unique NameEY659386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7474 contig Csv1_Contig7474:1..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659386 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.497e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:  435 VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVS 539
            VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIE +
Sbjct:  286 VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETN 320
[Close]
BLAST of EY659386 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.497e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:  435 VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVS 539
            VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIE +
Sbjct:  286 VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETN 320
[Close]
BLAST of EY659386 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 3 
Query:  435 VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVS 539
            VYVTMYLNDCQRT FYEGIGL+TKEFDMHVIIE +
Sbjct:  290 VYVTMYLNDCQRTNFYEGIGLNTKEFDMHVIIETN 324
The following BLAST results are available for this feature:
BLAST of EY659386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CRD1_GOSHI2.497e-1294.29Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_EUPES2.497e-1294.29Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH4.710e-1188.57Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659386 ID=EY659386; Name=EY659386; organism=Citrus sinensis; type=EST; length=949bp
CCTTGGTACATCTTATTAAACCGGNCCGGAATTCCTCCAAAACGGGCGCG
TCCGGAAGGCACATTCCCAAATCCTCAATGACTGGAAGGCAAAGTTGTGG
GCCCGATTTTTCTGCCTCTTTGTACCCCTTCATGCTTTATGAACATCAGT
TATATCTCACCCAACTTATATAAGCATTGGCTCTTTTTGTGATTATTTTC
ATGCTACTATGGCTGCAACCATAGAAAGAAAGCACAAACAGGATATTGAT
GGAGGTTTTGAAAATCTTGTAAGGTTGATTGCTATCATGTTTAGGTTTGT
GAAACCTAATGTAAGATCTTGTAATTGCATGCTAAATGTGTTTCTTATAA
GTCGCATGACATAAAGGATACTTTTCTTAGGTATCAGTAAGTTCATATAT
TCTTCTCCTGATAATTTCATAATTGTTCCTGCAGGTGTATGTCACAATGT
ATCTCAATGACTGCCAGCGTACTGCTTTCTATGAGGGCATTGGACTAGAC
ACCAAAGAATTTGACATGCATGTCATCATTGAGGTTAGTCTGTGGCTGAG
CTTGTTAGTGTGCTTTTTACAGAAGTTTATGAAGATTTCTGTGCTGCGAA
TCAATTGTCAATATGTAGAACTTGACAGCACATTGTGTACCAGCCAAGTG
AGCCAACGAAGCTCACTTTAACAATATCCTGCTTTTCTTCATTTGCATTT
TCAGTTTTAGTAAGACATCTAACAGTGTCAGTGTCATATCTATATGACCT
AGGAAAAGAGGACAGAATTACCATTTTTTATGATACTTGAACTTGTGGAT
TCTGAAATTCTTTTTTACAGACCAATCTCACAACGGCTAGAATATTCCCT
GCTGTGCTGGATGTTGAAACCCAAAGTTCAAGAGGAAGTTGCATCGGATG
GTAAAAACAACGAAAGCTTCTTGCCTGAAGGGCGACCAGGACATTCCTG
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